PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105537.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 416aa MW: 46905.2 Da PI: 7.6384

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.5	4.5e-31	108	161	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+a+e+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ XP_027105537.1 108 PRLRWTPDLHLSFVHAIERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 161 8****************************************************7 PP
2	Myb_DNA-binding	45.8	1.4e-14	109	160	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++ +v+a+++lGg t+k++ + m+ g++ ++ks++q+y+ XP_027105537.1 109 RLRWTPDLHLSFVHAIERLGGQeraTPKLVLQLMNvRGLSIAHVKSHLQMYR 160 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MSTKSATTLA EEFNCEAMVE DSDVNAKLKS DRNEDDTAQT SPDSSLNISS IDLNEEASSN 60 VDEETSSEVP DLSLVDCEKS SEGNSENYCT SVERNEKKVR QYNRSKLPRL RWTPDLHLSF 120 VHAIERLGGQ ERATPKLVLQ LMNVRGLSIA HVKSHLQMYR SKKLDESGQV IGLAKRGMQG 180 KGPFSGRMDQ MCSPVEQFRY QNGAIVVASN PNGGNNIVNI LSNASLQSPY ETKSLSSRFQ 240 QWSYYQDSMM KSQGKSCNSS IFHAMHGATR NGPIRPSSFL EEKRWPPREF SSHHLKEKRV 300 DPTASKWANA PFQPLYNQFH QPENSAGATY FMQRANWNRR DSLTAERVET NGNNPANILK 360 IESPYRHQMM NEHKILDGKE WSPDLQLSLS RSLGSYKDMA QNKGESDVNT RLSLSL

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MSTKSATTLA EEFNCEAMVE DSDVNAKLKS DRNEDDTAQT SPDSSLNISS IDLNEEASSN  60
VDEETSSEVP DLSLVDCEKS SEGNSENYCT SVERNEKKVR QYNRSKLPRL RWTPDLHLSF  120
VHAIERLGGQ ERATPKLVLQ LMNVRGLSIA HVKSHLQMYR SKKLDESGQV IGLAKRGMQG  180
KGPFSGRMDQ MCSPVEQFRY QNGAIVVASN PNGGNNIVNI LSNASLQSPY ETKSLSSRFQ  240
QWSYYQDSMM KSQGKSCNSS IFHAMHGATR NGPIRPSSFL EEKRWPPREF SSHHLKEKRV  300
DPTASKWANA PFQPLYNQFH QPENSAGATY FMQRANWNRR DSLTAERVET NGNNPANILK  360
IESPYRHQMM NEHKILDGKE WSPDLQLSLS RSLGSYKDMA QNKGESDVNT RLSLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-37	G2-like family protein