PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027105403.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 719aa MW: 79548.4 Da PI: 6.8954 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.8 | 1.1e-24 | 136 | 237 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + + XP_027105403.1 136 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyEQQ-RPSQELVAKDLHGMEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GGD 227 99****************************97433.45679************************************************3..378 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_027105403.1 228 GELRLGIRRA 237 999***9986 PP | |||||||
2 | Auxin_resp | 119.2 | 3.3e-39 | 261 | 342 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a++t+ vF+v+YnPra++seF+v++++++k++ +++s+GmRfkm+feted++err++G++vg+sd+dpvrW++S+Wr+L XP_027105403.1 261 VVNAVTTRRVFNVCYNPRAGSSEFIVPYQRFSKSVAHSISAGMRFKMRFETEDAAERRCTGLIVGISDADPVRWSGSRWRCL 342 6899*****************************************************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 719 aa Download sequence |
MCGLIDLNTV NNDDDGNGSE MTPSASESVC MELWHACAGP LISLPKKGSR VVYLPQGHLE 60 QLADQLSLSN IDLPPHIFCR VVDVKLHAEA TTDEVYAQVS LLPDYQMEHK WKEGEVEVET 120 EEDVEGAGKS LTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYEQQ RPSQELVAKD 180 LHGMEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGGDGEL RLGIRRAAQL 240 KSCSTFPTAS QQFNASSIIS VVNAVTTRRV FNVCYNPRAG SSEFIVPYQR FSKSVAHSIS 300 AGMRFKMRFE TEDAAERRCT GLIVGISDAD PVRWSGSRWR CLLVRWDDME VSRHNRVSPW 360 EIEPSGIVSG HSSLVTLGTK RTRTGLLTTK PEHSVARDAT GISEYGDIRL QKVLQGQEIV 420 GLNNPYDGFD ASSQHPSEMK SFPNTKDSRI SVVPNQLKSL QGDSFASHEV SFVEPFQFNQ 480 VLQGQETILN QSYGRGPAVD IVLESSGSSI LNGVQVPGQG NRWSAIRGYP THVQPPNPSG 540 QLSSPSSVMM FHQASYPVSK VRDAPCGGNL EKLEACNRGL FDTSERYIRR ISVCSPESSS 600 RREDVYGSSS GFLKDHRNLG YADTAFPNES SHRRGQTAVS MCKNSCRLFG FPLAEGKNGT 660 NEENQIQVKM PYDHDAAFVP ENDVQLHPKP SLVTKVTGNS CTKVSDLYNV RDMLLDIAL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-166 | ARF family protein |