PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027105328.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 743aa    MW: 81432.2 Da    PI: 4.609
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027105328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07250269525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      C+ffa+ G+C  G++C+F H
  XP_027105328.1 250 VCDFFAK-GWCIKGNSCRFLH 269
                     7******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    
MAAAAAAAKD PSSAETNSEA LSDEDIEYEE IEEEIEVEEE IEVEEEEEEV EEEVEEEVEE  60
EVEEEVVGGG DIKGEVDDDI DKEFGEELTP SNQVNDQNDT GQVIEPDCNE DHFIPGFATP  120
GISVANLLPD THVDQGCAGD YRISGSSVTT HNEEPHVDGK LFFMDHNNGA SPCDKWGRSG  180
DSTRLPVHEL DAAISLIDTE SKKDNEDPYF EKGTYDISGK DSKGEAPRIR PRSSSPESVL  240
NDGNKRQAVV CDFFAKGWCI KGNSCRFLHI KGGAAISSHD KEGTVDAAAK KSELPDKKAS  300
SVQLTPHGGE SPNKRSETKE LPLLKDDRLV LSSQDFGRPS SQDFGRQMNR EEYLGYGSSM  360
AKGNSLHGTF SRSYARTLET YGSTIGTPHS TSLEEMTCTR SNFLATDHSF SSLHRSPLSF  420
AYPSWNTDSL STQKQLGSGQ GDYASRSASV QRSSSPFSGS ESENVSQTNA VNDKQCSARS  480
KTKTLYDWEP SVPFRPSFFM TRHLLSSASL YDPIRDSVEQ ASSVVGHSKI SQSGKEASVL  540
GAHVQADADS FPTGTLGTEC SSNKYSVLFS AKNFSSKDST AEAKESVGTQ SQNKKSFLKE  600
ERFLDNECVR DVMEADQMPI DCGSKSVSSG RHRTESKEEM SRQMIEADAD LKVEESRALK  660
NFHASLVEVV KELLKPSWHK GVLSKDAHKI IVKKAVEKVL STLQPHQVPS TSESVKQYLS  720
LSQTKLAKLV EGYVDKYRKS SLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-39C3H family protein