PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027105323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 743aa MW: 81432.2 Da PI: 4.609 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.8 | 3.3e-07 | 250 | 269 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C+ffa+ G+C G++C+F H XP_027105323.1 250 VCDFFAK-GWCIKGNSCRFLH 269 7******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence |
MAAAAAAAKD PSSAETNSEA LSDEDIEYEE IEEEIEVEEE IEVEEEEEEV EEEVEEEVEE 60 EVEEEVVGGG DIKGEVDDDI DKEFGEELTP SNQVNDQNDT GQVIEPDCNE DHFIPGFATP 120 GISVANLLPD THVDQGCAGD YRISGSSVTT HNEEPHVDGK LFFMDHNNGA SPCDKWGRSG 180 DSTRLPVHEL DAAISLIDTE SKKDNEDPYF EKGTYDISGK DSKGEAPRIR PRSSSPESVL 240 NDGNKRQAVV CDFFAKGWCI KGNSCRFLHI KGGAAISSHD KEGTVDAAAK KSELPDKKAS 300 SVQLTPHGGE SPNKRSETKE LPLLKDDRLV LSSQDFGRPS SQDFGRQMNR EEYLGYGSSM 360 AKGNSLHGTF SRSYARTLET YGSTIGTPHS TSLEEMTCTR SNFLATDHSF SSLHRSPLSF 420 AYPSWNTDSL STQKQLGSGQ GDYASRSASV QRSSSPFSGS ESENVSQTNA VNDKQCSARS 480 KTKTLYDWEP SVPFRPSFFM TRHLLSSASL YDPIRDSVEQ ASSVVGHSKI SQSGKEASVL 540 GAHVQADADS FPTGTLGTEC SSNKYSVLFS AKNFSSKDST AEAKESVGTQ SQNKKSFLKE 600 ERFLDNECVR DVMEADQMPI DCGSKSVSSG RHRTESKEEM SRQMIEADAD LKVEESRALK 660 NFHASLVEVV KELLKPSWHK GVLSKDAHKI IVKKAVEKVL STLQPHQVPS TSESVKQYLS 720 LSQTKLAKLV EGYVDKYRKS SLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 6e-39 | C3H family protein |