PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027105313.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family SBP
Protein Properties Length: 137aa    MW: 15449.1 Da    PI: 8.3872
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027105313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1361.1e-4255130277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv++C+ad+++ k yhrrhkvCe+hskap vlv+g++qrfCqqCsrfh+lsefDe+krsCrrrLa+hnerrrk++
  XP_027105313.1  55 CQVDDCSADMKDSKPYHRRHKVCEHHSKAPIVLVAGVRQRFCQQCSRFHDLSEFDEAKRSCRRRLAGHNERRRKSS 130
                     **************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    
MEASKAEGKR SMKQVAAEED GDDDEDVGEE SKKRRALTLS GEKATGISGP IQPSCQVDDC  60
SADMKDSKPY HRRHKVCEHH SKAPIVLVAG VRQRFCQQCS RFHDLSEFDE AKRSCRRRLA  120
GHNERRRKSS YDSRGEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-43SBP family protein