PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105269.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LSD

Protein Properties

Length: 261aa MW: 28110.1 Da PI: 4.2739

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.1	2.2e-11	172	196	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YP+G ++V+C++C+tV XP_027105269.1 172 CGSCRLLLAYPPGVKYVQCSCCQTV 196 ************************9 PP
2	zf-LSD1	36.4	8.3e-12	210	234	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC +C V XP_027105269.1 210 CGGCAVLLMYPYGAPSVRCCSCRSV 234 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MGTEEKDLVK GGGGGGEEDD DDDDDGPPPG FHCIATQIEE NLVKEEKDAE INENEDDEDE 60 DVDGPPPGWS SIPPATFQPV HPSDVEMSDK QKEDENEEGP PPGWHSVPLA SQSSEAVLAD 120 TQTGNHEDRT KYIDEGSQPG QKSVPPLKLL PPTPPRPLPA VSSPSEKGQM VCGSCRLLLA 180 YPPGVKYVQC SCCQTVNLVL EDHQVGQVKC GGCAVLLMYP YGAPSVRCCS CRSVTEIGAH 240 NRRPPLSVQQ ARRPLSVNRV H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-36	LSD family protein