PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027104977.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 700aa    MW: 76785.9 Da    PI: 6.4006
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027104977.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23124225199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +
  XP_027104977.1 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 214
                     89****************************986445444..8999*********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_027104977.1 215 NGDLCVGIRRA 225
                     8999****997 PP

2Auxin_resp1111.1e-36294377183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++Fev+Y+Prast+eFvvk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+  d ++WpnS+Wr+L+
  XP_027104977.1 294 AANLAASGQAFEVIYYPRASTPEFVVKASAVKAAIRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVDDRIHWPNSPWRLLQ 377
                     7899******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    
MITVMNSGNE PMNEVEKSLD PQLWHACAGG MVQMSPVNSK VFYFPQGHAE HAHKSVDFGT  60
FCTIPPLILC RVSSIKYLAD TETDEVFAKI RLVPLRGNEC SDDDGDDGLL AFDKNDGQEK  120
PSSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTILAKDVH GEIWKFRHIY  180
RGTPRRHLLT TGWSNFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GGPEAPSGWN  240
TSAGNCTSSL YGGFSRLLGE EENRIMRNPK GGTNNSDIGA RGRGKVRAES VVEAANLAAS  300
GQAFEVIYYP RASTPEFVVK ASAVKAAIRI QWCSGMRFKM PFETEDSSRI SWFMGTISSV  360
QVDDRIHWPN SPWRLLQVAW DEPDLLQNVK RVSPWLVELV SNMPAINLCP FSPPRKKLRL  420
PQPPEFPLVG QLPMPSLFSN PLSPSSPLCC LPDKIPAGIQ GARHAQFGLP SSEPHFNKLQ  480
AGLFPFKLKQ LEHAAAAASR IPNSSCFMED YESKDNVSCV LTIGNSVQGS KPNVRTEAPL  540
FVLFGQPILT EQQISQSSSG DTARSSLSER NPENTVTVSG GSGSGVLQSG HPENSLDQVL  600
PWYKDPKLEF GLETGHCKVF MESEDVGRTL DLSVFGSYEE LYGKLAEMFG LERSEMLSNV  660
LYQDPAGVVK HSGDEPFSDF LKAARRITIL TDSGSDNVCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein