PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027104962.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 1448aa MW: 161391 Da PI: 6.9369

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027104962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	1336	1359	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 +kC+ C +sF +k +L+ H+r XP_027104962.1 1336 HKCSieGCRMSFQTKAELVLHMRD 1359 799999****************96 PP
2	zf-C2H2	14.1	0.00013	1360	1383	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+Fs++ + ++H+r+H XP_027104962.1 1360 RCPvqGCGKRFSSHKYATSHQRVH 1383 79999*****************99 PP
3	zf-C2H2	11.5	0.00094	1419	1445	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H XP_027104962.1 1419 YKCKvdGCGLSFRFVSDFSRHRRKtgH 1445 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1448 aa Download sequence
MVLNIVDRMG AVEIPKWLEE LPLAPEFRPT DTEFADPIAY ISKIEKKASA FGICKVIPPV 60 PKPSKRYVLY NLNKSLSKCP ELGSEVNVSS SMNMNDGAEG SNGSEARAVF TTRHQELGQN 120 GKRVKGAAGN QLIGAPKQVW QSGEVYTLEQ FEAKSKNFAK SQLGVVKEVS PLVIEAMFWK 180 AASEKPIYVE YANDVPGSGF GEPEGSFRYF NRRRRRRRKR GTFDRNNQGS SCNNDHVTNC 240 SSTVNYSSVD KDAQASNLHS EVSGASTSLP SMSLDQSENF SDGKFSNASN EMHGTAGWKL 300 SNSSWNLQVI ARSPGSLTRY MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSLNFLHTG 360 SPKTWYSVPG DYAFDFEEVV RLQAYGGNTD PLDALTLLGE KTTLFSPEVI VAAGIPCCRL 420 VQNPGEFVVT FPRAYHVGFS HGFNCGEAAN FSTPKWLTIA KEAAVRRAAM NYLPMLSHQQ 480 LLYLLTMSFV SRVPRSLLPG ARSSRLKDRQ KEERELSVKK AFIEDILKEN HLLTILLQKN 540 SSYRVVLWDV DLLPASSKDS ELCSTVVTDG TQRREDSHPD NCSNQDLYTQ MSLYMDTITD 600 FYVDDADDIQ NDYQVDSGTL PCVACGILGF PFMAVVQPSE QASRDLLPED QAMTQQLGVC 660 QPAGCKSLDL DFRAESCIPE TRKPVKKNIN HPDEASPFAE SSPSTCSHME EDALSVDINT 720 SSFPVHVTAS SAVKFDGGWN LSTGYFRPQL FCLEHAIETV ELLRPKGGAN VLGICHSDFQ 780 KIKAHSAVVA EEISIPFNYN EIPLGNASQE DLYLIDHAIE NQEKDEGAQD WTSKLNLNLR 840 HCVKMRKNFP SQKVKHALAL GGLFSDGVLH LKALKWQSRK SRSKRNADPT NFSKPSVSIQ 900 TEKVEEPVEK SGSRMSRKLG QVMIQYYRKR HKSKPRGSEG AIKALVVSEK HPSDEISGAD 960 SGNCKEKERD MSMNTHVRVE GAGKGASGPT CLAYSRKSKL RNEGQKVVSG GGLNENLSPL 1020 KLVDSSIATN PVAGNINVHT GSGMSDELVE LNKNYDLLLK DSHKLSMINV AEETDENHDS 1080 VNSENSAGSL GISVYDTESS EVMREDEIVC RINMAKMTCD VVTTNESERK YHRNADGDVL 1140 MKEASEPAPS CPHADESSGE RCNQQVETTV LDKCQMSSGE MEKEISSMKG ADRERAVSSD 1200 VLTSNTSNPS LTEELEAPRE MPADDQQQRD NQSCTLFENK EVDDAISTLE QFQHTEKMRS 1260 KRKREVDIQN EDQPNFGSFS RSPCEGLRPR TKRDAAGDTT GAEKPFEDLS KGRKVNKHLN 1320 GSDLHKHKRE QKRCSHKCSI EGCRMSFQTK AELVLHMRDR CPVQGCGKRF SSHKYATSHQ 1380 RVHDDDRPLK CPWKGCRMTF KWAWARTEHI RVHTGERPYK CKVDGCGLSF RFVSDFSRHR 1440 RKTGHYVN

Sequence ? help Back to Top

Protein Sequence Length: 1448 aa Download sequence

MVLNIVDRMG AVEIPKWLEE LPLAPEFRPT DTEFADPIAY ISKIEKKASA FGICKVIPPV  60
PKPSKRYVLY NLNKSLSKCP ELGSEVNVSS SMNMNDGAEG SNGSEARAVF TTRHQELGQN  120
GKRVKGAAGN QLIGAPKQVW QSGEVYTLEQ FEAKSKNFAK SQLGVVKEVS PLVIEAMFWK  180
AASEKPIYVE YANDVPGSGF GEPEGSFRYF NRRRRRRRKR GTFDRNNQGS SCNNDHVTNC  240
SSTVNYSSVD KDAQASNLHS EVSGASTSLP SMSLDQSENF SDGKFSNASN EMHGTAGWKL  300
SNSSWNLQVI ARSPGSLTRY MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSLNFLHTG  360
SPKTWYSVPG DYAFDFEEVV RLQAYGGNTD PLDALTLLGE KTTLFSPEVI VAAGIPCCRL  420
VQNPGEFVVT FPRAYHVGFS HGFNCGEAAN FSTPKWLTIA KEAAVRRAAM NYLPMLSHQQ  480
LLYLLTMSFV SRVPRSLLPG ARSSRLKDRQ KEERELSVKK AFIEDILKEN HLLTILLQKN  540
SSYRVVLWDV DLLPASSKDS ELCSTVVTDG TQRREDSHPD NCSNQDLYTQ MSLYMDTITD  600
FYVDDADDIQ NDYQVDSGTL PCVACGILGF PFMAVVQPSE QASRDLLPED QAMTQQLGVC  660
QPAGCKSLDL DFRAESCIPE TRKPVKKNIN HPDEASPFAE SSPSTCSHME EDALSVDINT  720
SSFPVHVTAS SAVKFDGGWN LSTGYFRPQL FCLEHAIETV ELLRPKGGAN VLGICHSDFQ  780
KIKAHSAVVA EEISIPFNYN EIPLGNASQE DLYLIDHAIE NQEKDEGAQD WTSKLNLNLR  840
HCVKMRKNFP SQKVKHALAL GGLFSDGVLH LKALKWQSRK SRSKRNADPT NFSKPSVSIQ  900
TEKVEEPVEK SGSRMSRKLG QVMIQYYRKR HKSKPRGSEG AIKALVVSEK HPSDEISGAD  960
SGNCKEKERD MSMNTHVRVE GAGKGASGPT CLAYSRKSKL RNEGQKVVSG GGLNENLSPL  1020
KLVDSSIATN PVAGNINVHT GSGMSDELVE LNKNYDLLLK DSHKLSMINV AEETDENHDS  1080
VNSENSAGSL GISVYDTESS EVMREDEIVC RINMAKMTCD VVTTNESERK YHRNADGDVL  1140
MKEASEPAPS CPHADESSGE RCNQQVETTV LDKCQMSSGE MEKEISSMKG ADRERAVSSD  1200
VLTSNTSNPS LTEELEAPRE MPADDQQQRD NQSCTLFENK EVDDAISTLE QFQHTEKMRS  1260
KRKREVDIQN EDQPNFGSFS RSPCEGLRPR TKRDAAGDTT GAEKPFEDLS KGRKVNKHLN  1320
GSDLHKHKRE QKRCSHKCSI EGCRMSFQTK AELVLHMRDR CPVQGCGKRF SSHKYATSHQ  1380
RVHDDDRPLK CPWKGCRMTF KWAWARTEHI RVHTGERPYK CKVDGCGLSF RFVSDFSRHR  1440
RKTGHYVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	217	RYFNRRRRRR
2	212	217	RRRRRR
3	212	218	RRRRRRR
4	212	220	RRRRRRRKR
5	213	218	RRRRRR
6	213	220	RRRRRRKR
7	213	219	RRRRRRR
8	213	221	RRRRRRRKR
9	214	220	RRRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein