PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027104730.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 231aa MW: 26398.2 Da PI: 6.9025

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027104730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.1e-09	30	73	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ Ed+l+ +a ++ + +W +Ia +++ g+t+++++ ++ XP_027104730.1 30 TWTKYEDKLFEQALVGFPEDlpnRWQKIADRVP-GKTAEDVRVHY 73 6***********9999999999*****.*******99 PP
2	Myb_DNA-binding	41.7	2.7e-13	138	182	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G g+W++I+r + +Rt+ q+ s+ qky XP_027104730.1 138 PWTEEEHRLFLIGLDRYGRGDWRSISRNVVVTRTPTQVASHAQKY 182 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MYNSPNDSNN NTNQSWMMYN SAPPHPPVVT WTKYEDKLFE QALVGFPEDL PNRWQKIADR 60 VPGKTAEDVR VHYEALVHDV GEIEAGRVEL PNYADEDEFF GWGEPLQPPP ESRTPNQISF 120 GASGKAKHGD GERKKGTPWT EEEHRLFLIG LDRYGRGDWR SISRNVVVTR TPTQVASHAQ 180 KYYLRQTSGK KERKRSSIHD ITTPLESKTV APPSNFPNQA GYQNFSFPEQ R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	6e-74	MYB family protein