PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027104296.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 264aa    MW: 29194.2 Da    PI: 7.8944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027104296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-1479125354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+E+rRRdriN  +++Lr+l+Pk+     +K++Ka+ L  +ve++k++
  XP_027104296.1  79 RSHSEAEKRRRDRINAQLATLRKLIPKS-----EKMDKAALLGSVVEHVKEM 125
                     78*************************8.....8***************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MANCFSSADL QEDAAWKVCH QAAVEQNSMD LPFLAPQLNN NSTPDEASSF NFDGYPFSLH  60
PWSIPAEGFA EGRAASASRS HSEAEKRRRD RINAQLATLR KLIPKSEKMD KAALLGSVVE  120
HVKEMKSKTT EISNCMMIPT DVDEVTVDYV DDEYCSSIAK DRKILLKACV CCDDRPEFFS  180
ELNRALKSLR LTTVEANVIS LGGRIKSSFI LCPISSSVEG GICGNTLKQS LKLVLSRIAA  240
SCTTSTGSNY RIKSRRQRFF LPSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-32bHLH family protein