PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027104293.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 386aa MW: 43364.7 Da PI: 8.9723

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027104293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.3e-32	77	130	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_027104293.1 77 PRLRWTPELHLCFIHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 130 8****************************************************7 PP
2	Myb_DNA-binding	52.5	1.2e-16	78	129	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e+++ +++av++lGg t+k++ + m+ kg++ ++ks++q+y+ XP_027104293.1 78 RLRWTPELHLCFIHAVERLGGQdraTPKLVLQLMNiKGLSIAHVKSHLQMYR 129 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MKESSCSTED SKTSPTTNQR LEDDEEDHED DDHQEDMNNN STKPNITGTS SSNSTVEENS 60 KKPASGSVRQ YIRSKTPRLR WTPELHLCFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH 120 VKSHLQMYRS KKIDDPNQVI SEQRLLADSG DHNIYNLSKL PMLQAFDHFS SSGSLRYGNT 180 FWNSRQTNYH GPYNYGGPPS NFTRHGFGTA DKFFGRNNVG HLYGSHEFNA ARQSSWRNIL 240 ANENETQFFS GQRPWRTQSG TGTSSNVKPS LMSQLHDRGR SEQINADFRG PLSPGKKPHA 300 VQEGINLLKR KASADSDMNL DLNLSLPTPR QTDERDNRRL KVDGTDNSLS LSLFPSSTPV 360 SSRNLEEIHG NTRKHARTAS TLDLTL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MKESSCSTED SKTSPTTNQR LEDDEEDHED DDHQEDMNNN STKPNITGTS SSNSTVEENS  60
KKPASGSVRQ YIRSKTPRLR WTPELHLCFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH  120
VKSHLQMYRS KKIDDPNQVI SEQRLLADSG DHNIYNLSKL PMLQAFDHFS SSGSLRYGNT  180
FWNSRQTNYH GPYNYGGPPS NFTRHGFGTA DKFFGRNNVG HLYGSHEFNA ARQSSWRNIL  240
ANENETQFFS GQRPWRTQSG TGTSSNVKPS LMSQLHDRGR SEQINADFRG PLSPGKKPHA  300
VQEGINLLKR KASADSDMNL DLNLSLPTPR QTDERDNRRL KVDGTDNSLS LSLFPSSTPV  360
SSRNLEEIHG NTRKHARTAS TLDLTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	9e-46	G2-like family protein