PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103725.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 708aa    MW: 76994.3 Da    PI: 8.0589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.51.4e-1043397083374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + + ++A a+s+g +e+a+++L+rl + a+p+g++ qRl+ay+t AL++r++       +   p + +e  ++e+  ++++++evsP++k+++ +
  XP_027103725.1 339 QSIADVALAISEGRMEAATEVLTRLAQVANPRGTSEQRLTAYMTSALRSRVNP-----TD-Y-PPPVTELYTAEHSDSTQMLYEVSPCFKLGFTA 426
                     567889**********************************************9.....22.2.2222334588999999**************** PP

            GRAS  98 aNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     aN aI ea++ge    ++H+iDfdi+qG+Q+  Ll+ La+ + ++p  l+iT+++++ ++  +e+l++++ +L+ +A++lgv ++ +v ++ r+ 
  XP_027103725.1 427 ANLAIQEAISGEqpaGKLHVIDFDIGQGGQYEHLLHLLATMKaDKPSVLKITTLVDSVNNgGEERLRAVRGNLEALANKLGVCLSLRV-TSLRIG 520
                     ************888899*********************665267779*****99987778**************************9.999*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +l+ e+L v+++EalaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv++veqe+  n+++F++r+ ea+ yy  l+dslea+++r+  +r
  XP_027103725.1 521 ELNREKLGVESDEALAVNFAFRLYRLPDESVTTENLRDELLRRVKWLSPKVVTLVEQEMGANTAPFVTRVKEACAYYGLLLDSLEATVGRDRPDR 615
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + +E+  +gr++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++ ++ ++ l+ v    +g++v+e+sg +++gW++r+L+++SaWr
  XP_027103725.1 616 VRIEEG-VGRKLANSVACEGRDRVERCEVFGKWRARMSMAGFELKPMSQTVGDSLRSKLHSVTrgIQGFTVNEQSGGVCFGWMGRTLTVASAWR 708
                     ******.*****************************************************99877899*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    
MSSGFSGGGG PDFFTSSGIA TGRSTNPMMP TMNMNMNVTN PSQLPYRSAL AGILPDPAAQ  60
IVHRGPDLIG KRSLTEFQQQ HQLLQQQQQQ HQQQMGGLGP LYSNLRNVKP RVNYQHASPI  120
SPLSPVDLSV ISSLSPEASS ISNSSSPMNP RYGRPILQQF RPQQQQQQLQ QPQPQPPRMM  180
SNCGLTATAS LSNGNIIQPA SSGGMPNQPN KFIPSNISSS SSVSFPNLFH NQRAVVPMPM  240
PVGMVTPGKQ LFSAPQDQTE KKMMNKLQEL EKQLFDDDDE GGCGGDAVSV VTNSEWSDTI  300
HSLNMITTTN CKAISPSPTS SSSSCSSTSA SPPIACPKQS IADVALAISE GRMEAATEVL  360
TRLAQVANPR GTSEQRLTAY MTSALRSRVN PTDYPPPVTE LYTAEHSDST QMLYEVSPCF  420
KLGFTAANLA IQEAISGEQP AGKLHVIDFD IGQGGQYEHL LHLLATMKAD KPSVLKITTL  480
VDSVNNGGEE RLRAVRGNLE ALANKLGVCL SLRVTSLRIG ELNREKLGVE SDEALAVNFA  540
FRLYRLPDES VTTENLRDEL LRRVKWLSPK VVTLVEQEMG ANTAPFVTRV KEACAYYGLL  600
LDSLEATVGR DRPDRVRIEE GVGRKLANSV ACEGRDRVER CEVFGKWRAR MSMAGFELKP  660
MSQTVGDSLR SKLHSVTRGI QGFTVNEQSG GVCFGWMGRT LTVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-146GRAS family protein