PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027103677.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 392aa MW: 42660.1 Da PI: 4.6588

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027103677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.9	2.1e-28	185	243	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++k+s++pr+YYrC+++ gC+++k+ver+ dp++ ++ Y+geH h+ XP_027103677.1 185 ADSWAWRKYGQKPIKDSPYPRNYYRCSTSkGCTARKQVERCPADPSMYVVSYSGEHSHP 243 69**********************9988**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MADDWDLYAV VRSCFNAAAT STASSSTTTD AAIAPVENSS LPSGETSLSA SFLASPSFQS 60 GHTSSDFPGF ANHTRDSFRG LEEIYKEPYE DIVQSFVDLN SHAQHIQAIQ GPGCTADQTP 120 QQQRIYGQPQ QLMQQPQRYS HLSREMFVGA SLSFPSTSPQ PERPRRRKNQ QAKRIQQMTQ 180 EELSADSWAW RKYGQKPIKD SPYPRNYYRC STSKGCTARK QVERCPADPS MYVVSYSGEH 240 SHPRPTHRSS LAGTTRSKVP PAAAAAARPP TTTTATTTST TNIHNIASSS IASCSSSSPA 300 SASSFSPTAT PITEGDSGVD ENVDQETADN ENNNSYGAEL LLSGEEEVEG WADDGDDDDE 360 NDGDGNGDDD ILIPNYALVN DDRFFKGLHF KN

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MADDWDLYAV VRSCFNAAAT STASSSTTTD AAIAPVENSS LPSGETSLSA SFLASPSFQS  60
GHTSSDFPGF ANHTRDSFRG LEEIYKEPYE DIVQSFVDLN SHAQHIQAIQ GPGCTADQTP  120
QQQRIYGQPQ QLMQQPQRYS HLSREMFVGA SLSFPSTSPQ PERPRRRKNQ QAKRIQQMTQ  180
EELSADSWAW RKYGQKPIKD SPYPRNYYRC STSKGCTARK QVERCPADPS MYVVSYSGEH  240
SHPRPTHRSS LAGTTRSKVP PAAAAAARPP TTTTATTTST TNIHNIASSS IASCSSSSPA  300
SASSFSPTAT PITEGDSGVD ENVDQETADN ENNNSYGAEL LLSGEEEVEG WADDGDDDDE  360
NDGDGNGDDD ILIPNYALVN DDRFFKGLHF KN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	168	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	2e-45	WRKY family protein