PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027103515.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 599aa MW: 63436.9 Da PI: 6.4153

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027103515.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.2	1.5e-23	222	265	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e+ XP_027103515.1 222 LEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKPVEQ 265 69**************************************9985 PP
2	QLQ	52.6	1.4e-18	175	207	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FTa Q+ +L++Q+++yKy++a++PvP++Ll++ XP_027103515.1 175 PFTAVQWKELERQAMIYKYMIASVPVPSDLLLP 207 8******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence
MEESSSSSSS SAGIITTASH RTQSFPSNNG VMDHHHRPLL SSANGADDDD EDDGGGRGSG 60 RSQNDSGPNE VERSPAPTPT PKPPNYSCRH SSSTGPSRTS SSSATTTSTS TGIVFPDRVV 120 VVTNNGSATA GLAAAAAATT LQPFDFPCSI TNTASKSPGG GGLGMAAASA ALGFPFTAVQ 180 WKELERQAMI YKYMIASVPV PSDLLLPADP TAAPCLYGNR DLEPGRCKRT DGKKWRCSRD 240 VAPHQKYCER HMHRGRPRSR KPVEQLQSSS VSPDDNPNNN ISKKSRLHHT SLHPNPTVAQ 300 PDNHSSPQFQ GTGTIQQLKD PQLLDASIAF NSIFASSCNY KESNRVFGWA VDGEVMAANR 360 VEQESLHLMD TRRREGLAPI RGYIYGTNAS TLQQGYGEEG PLNLFSYATE IAYPGGIHSR 420 NDEYYHAFLN SDLIASKQPQ IDQHCPPRGF IDAWSNGDLK TIDESSVPSS RGNGLSPSSL 480 PLSMAMAAGN ALDEGTGLAE DSHPRMPTPK DSPVSWLPLI PGGPLAEVLQ PNSVACGSNP 540 ASPYASNGDS VSPPATTVSS PTGIFQRALF SHSDGSVCNS PALAASAAPP EVVAFQWLN

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence

MEESSSSSSS SAGIITTASH RTQSFPSNNG VMDHHHRPLL SSANGADDDD EDDGGGRGSG  60
RSQNDSGPNE VERSPAPTPT PKPPNYSCRH SSSTGPSRTS SSSATTTSTS TGIVFPDRVV  120
VVTNNGSATA GLAAAAAATT LQPFDFPCSI TNTASKSPGG GGLGMAAASA ALGFPFTAVQ  180
WKELERQAMI YKYMIASVPV PSDLLLPADP TAAPCLYGNR DLEPGRCKRT DGKKWRCSRD  240
VAPHQKYCER HMHRGRPRSR KPVEQLQSSS VSPDDNPNNN ISKKSRLHHT SLHPNPTVAQ  300
PDNHSSPQFQ GTGTIQQLKD PQLLDASIAF NSIFASSCNY KESNRVFGWA VDGEVMAANR  360
VEQESLHLMD TRRREGLAPI RGYIYGTNAS TLQQGYGEEG PLNLFSYATE IAYPGGIHSR  420
NDEYYHAFLN SDLIASKQPQ IDQHCPPRGF IDAWSNGDLK TIDESSVPSS RGNGLSPSSL  480
PLSMAMAAGN ALDEGTGLAE DSHPRMPTPK DSPVSWLPLI PGGPLAEVLQ PNSVACGSNP  540
ASPYASNGDS VSPPATTVSS PTGIFQRALF SHSDGSVCNS PALAASAAPP EVVAFQWLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	5e-38	GRF family protein