PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103396.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 609aa    MW: 69102 Da    PI: 6.8825
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.91.3e-1122356052374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL++ A+av++ d++ aq+lL+r++e++sp gd++ Rla+yf++AL+ar+++++++ly ++++++ s     + l+a++++  ++P+ ++s++
  XP_027103396.1 235 SSLLTQSAQAVAEYDNKTAQELLNRIREHSSPCGDATGRLAHYFANALEARISGMGTTLYTSFTSRKVS---AGDILKAYQAYILACPFKRMSNI 326
                     689*********************************************************999999998...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      a + I + ++g++++HiiDf+i +G+QWp+L+q L+ Rp+gpp+l iTg++ p++g   +e++eetg+rLa ++++++vpfe+++ +akr+e++
  XP_027103396.1 327 FADKSIGRLTKGARCLHIIDFGIAYGFQWPCLIQGLSLRPGGPPKLHITGIDLPQPGfqPTERVEETGRRLAYYCKKFNVPFEYHA-IAKRWETI 420
                     ********************************************************9999**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +le+L++ +gE+++Vn+ ++l +++de+++ + +rd+vL+l+k+++P+ +v+   +  +n + F++rf eal+++s+lfd+le+++p+ +++r+ 
  XP_027103396.1 421 QLEDLKIGKGETIVVNCLYRLRHIPDETAEGSTARDDVLNLIKKINPDFFVHGVTNGTYNVPFFVTRFREALHHFSSLFDMLEKTVPQSDQDRML 515
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E+e+lgr+ +nv+aceg++r+er et+++W+ r ++aGF+++pl+++++ ++++ ++  + + + v+e+ +++++gWk+r  +++S+W+
  XP_027103396.1 516 FEKEVLGRDSMNVIACEGSQRIERPETYKQWHVRNQRAGFSQLPLNQDIVREVRAKVKLQYHKDFLVDEDGHWILQGWKGRVFYALSCWK 605
                     *************************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    
MQRNCLMEFK YNCQSISASL EKNLAFECGI GSTCNFDVAG HSPSVGSSFP VNAAAQPEGD  60
SSLPVDHFDG VFKYLNQMLM EEDLEQRPCM YQDLLALQAA EKSFHDALTG ADFNVVANKE  120
EKKRDDFDNG SRRRRNHDRE DSEHGEGRSS KLFASHNEAG MPENEAAEEM YDKALLCPKR  180
NPGFYDDSST CDSDDPTPES KGWNYQKVGI KPESKRGRPR AGEKKINIRE LVDLSSLLTQ  240
SAQAVAEYDN KTAQELLNRI REHSSPCGDA TGRLAHYFAN ALEARISGMG TTLYTSFTSR  300
KVSAGDILKA YQAYILACPF KRMSNIFADK SIGRLTKGAR CLHIIDFGIA YGFQWPCLIQ  360
GLSLRPGGPP KLHITGIDLP QPGFQPTERV EETGRRLAYY CKKFNVPFEY HAIAKRWETI  420
QLEDLKIGKG ETIVVNCLYR LRHIPDETAE GSTARDDVLN LIKKINPDFF VHGVTNGTYN  480
VPFFVTRFRE ALHHFSSLFD MLEKTVPQSD QDRMLFEKEV LGRDSMNVIA CEGSQRIERP  540
ETYKQWHVRN QRAGFSQLPL NQDIVREVRA KVKLQYHKDF LVDEDGHWIL QGWKGRVFYA  600
LSCWKPIQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-173GRAS family protein