PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103251.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HSF
Protein Properties Length: 319aa    MW: 36553.7 Da    PI: 7.5995
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind25.82.9e-084379238
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHH CS
    HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeeefak 38
                    Fl+k+++++ed +++++isw+++ +s++v+d+ ++a 
  XP_027103251.1 43 FLTKTFQMVEDTKTNNMISWNSDDTSLIVWDHLKLAA 79
                    9******************************988876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MEICGGGIAG NGAIVRPSSL PSKQASEKME FMKGGCRFTP PPFLTKTFQM VEDTKTNNMI  60
SWNSDDTSLI VWDHLKLAAE GFRKIGPRQY EYENKWFQRG QEHLLMNIRR RYDADPTIRK  120
RRGPRKQHVM AARPSMEAEL EIFEDHMNAL KEEITAARPS MEVELEIFED HMNALKEEIT  180
SSNYRMGKLE SSIATFNKNV KRMEAKSKAL IKVLAGKFGP AVVEKIIQRV EEELELETFQ  240
TMKRRRVILP QSSKTTTKSM NDGACGMDQD DQEANTSLAE SKQRADQKLW KKFVGDDSVS  300
EDESEQQLLR QHSRIDMAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243247KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-20HSF family protein