PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027103238.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 720aa MW: 83707.5 Da PI: 8.9589

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027103238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.3	6e-19	78	168	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y ++ +GFsvrks++ k ++g + r++vCs++g r++++ + ++++r+++a+t+++Cka +kv+++ ++k++v++++ HnH+la XP_027103238.1 78 YYVMLGRATGFSVRKSYKLKDLETGWVRYRQWVCSRQGLRDKKHIQrKDRQREPKAVTKVDCKAYFKVRLSGeEDKYVVSNIVMRHNHKLA 168 7899999*******************************99987657888999*************99**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MQSANDPNGK RPMQDSWKDL TIWDATDEFE ISETEEGTQG MFVRGQLHEG VEDFNYEDLD 60 ERDVMTMKFN IENEAEAYYV MLGRATGFSV RKSYKLKDLE TGWVRYRQWV CSRQGLRDKK 120 HIQRKDRQRE PKAVTKVDCK AYFKVRLSGE EDKYVVSNIV MRHNHKLASP TSTKFLKSHR 180 HISEADYAQA HVLRRVGMKT SQIMKLFVLQ CGGYNNVPFT IKDLYNKMNS ERMEEIADGD 240 AEGAFAYLFG KKDVDPNLYF NFTVDSERRL SRLFWSDSKS REDYRCFGDV IVFDSTYNTN 300 KYLHPLVVMC GINNHFSTSI FACSTVREED EGAYEWVLNT FLEAMDGKKP ISVVTDGAPQ 360 MRKAIKKCLP NMKHRLCCWH LNQNLNSHVG NKDFRVGFKD CMYNNCCIDK FEAKWAKLVC 420 SFNMENNYWV KQVYRKRKRW ALAYLRGYFF GGMRSTQRCE RMHAMLKIYL HRELRLFETL 480 RAFDLANAWL RHEEARMNVE TKHTSLLPAT ETHYLEQHAV EVFTRRIFLK VRAEMRSQGL 540 YFRYNAMDDG VQCIHFISHS YSNGELRVLY NRTSGIMSCS CLQMETVRLP CSHMFRIMVI 600 EGMKKIPPNC IMQSWTRDAR LGRSGSLQER SEVTNVNEMA RYARLSSGCN TMCYYGAKTT 660 TGYTQLLNVI DIQTAEMKTL SLEESIATGS SSQAHRKGDA SGKVGIGDPH ANRLRGDKRT

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MQSANDPNGK RPMQDSWKDL TIWDATDEFE ISETEEGTQG MFVRGQLHEG VEDFNYEDLD  60
ERDVMTMKFN IENEAEAYYV MLGRATGFSV RKSYKLKDLE TGWVRYRQWV CSRQGLRDKK  120
HIQRKDRQRE PKAVTKVDCK AYFKVRLSGE EDKYVVSNIV MRHNHKLASP TSTKFLKSHR  180
HISEADYAQA HVLRRVGMKT SQIMKLFVLQ CGGYNNVPFT IKDLYNKMNS ERMEEIADGD  240
AEGAFAYLFG KKDVDPNLYF NFTVDSERRL SRLFWSDSKS REDYRCFGDV IVFDSTYNTN  300
KYLHPLVVMC GINNHFSTSI FACSTVREED EGAYEWVLNT FLEAMDGKKP ISVVTDGAPQ  360
MRKAIKKCLP NMKHRLCCWH LNQNLNSHVG NKDFRVGFKD CMYNNCCIDK FEAKWAKLVC  420
SFNMENNYWV KQVYRKRKRW ALAYLRGYFF GGMRSTQRCE RMHAMLKIYL HRELRLFETL  480
RAFDLANAWL RHEEARMNVE TKHTSLLPAT ETHYLEQHAV EVFTRRIFLK VRAEMRSQGL  540
YFRYNAMDDG VQCIHFISHS YSNGELRVLY NRTSGIMSCS CLQMETVRLP CSHMFRIMVI  600
EGMKKIPPNC IMQSWTRDAR LGRSGSLQER SEVTNVNEMA RYARLSSGCN TMCYYGAKTT  660
TGYTQLLNVI DIQTAEMKTL SLEESIATGS SSQAHRKGDA SGKVGIGDPH ANRLRGDKRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-86	FAR1 family protein