PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027103216.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 337aa MW: 38280 Da PI: 5.4988

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027103216.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.1	2.1e-21	80	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++++ +++trtgC+a+++vk + + k++vt+++ eHnH+la XP_027103216.1 80 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKKEAKPVTRTGCEACFRVKYDIeSVKYVVTRFVMEHNHPLA 170 6**************98887.8998999*********9888678888899***********98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGQDGALKTH DMLQETENGK IGMDGCDLNQ EPECDRDTFS EESGGSIGGH ENEEADELVG 60 AIGVDDVMKL TFDTEEEAGE FYNLYAKLSG FGIRKSNAKR DADGISRFRK WVCCCEGYRN 120 EKWFNYEDRK KEAKPVTRTG CEACFRVKYD IESVKYVVTR FVMEHNHPLA SEASVQHIRS 180 HRKVSDAEYA QAKSLKLVGA RICQITKHFV IKAGGYSNVG FCIKDLYNRM DEERRKDILN 240 GDAEGALGFL AVKKDADDMF FYKYHVDNEG RLVRLFWADS KSRVNFSVFG DVLVFDTTYQ 300 TNKYRKPLVV LAGVNNHLNS TIFGCALLSD ERIETYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-44	FAR1 family protein