PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027103167.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GATA | ||||||||
Protein Properties | Length: 196aa MW: 21299.8 Da PI: 10.9506 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.2 | 3e-15 | 83 | 117 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+tt TplWR gp g+k+L naCG++y kk++ XP_027103167.1 83 CSDCHTTRTPLWRGGPAGPKSLYNACGIKYNKKRR 117 ********************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MIWRWTIENF AVASLGAMLF AKVITSLIIP SLWNTTSNVV IKAAHDIIST YLQNICAMDA 60 KNAKRSSSSS SPSASSSKQL KSCSDCHTTR TPLWRGGPAG PKSLYNACGI KYNKKRRELL 120 RLDRGRNDKG KKKRKSSSGG NKSNEGGGVG QSLRMKLMAL GGEMVLRRSG KLMGKLREEE 180 QAAILLMALS CGSVYA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 135 | KKRRELLRLDRGRNDKGKKKRK |
2 | 115 | 136 | KKRRELLRLDRGRNDKGKKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-23 | GATA family protein |