PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027103024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 141aa MW: 16409.1 Da PI: 8.4158 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 9.8e-12 | 42 | 61 | 7 | 26 |
SGGGGTS--TTTTT-SS-SS CS zf-CCCH 7 rffartGtCkyGdrCkFaHg 26 + +++tG+C+yG++C+FaHg XP_027103024.1 42 NKWQETGECPYGENCQFAHG 61 67*****************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence |
MSGVLAQHHP AQRVYVPGRE KEKQTVELEV CNQRMFKTEL RNKWQETGEC PYGENCQFAH 60 GIKELRPVLR HPRYKTELYS SYSYGDYAGP NTYYTTSQLS EPAFYNYYKH GYERSSQDYA 120 HFINYSTVQF GHSPTSGSRA G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 5e-27 | C3H family protein |