PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103018.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 467aa    MW: 52599.7 Da    PI: 6.0663
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.51.3e-124504625373
            GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     L++cA++v++g+l  a++ L+++s laspdgd +qR++ayfteALa r+++   ++l kal++++ +    +e + a+klf+e +P+l++s++++
  XP_027103018.1  50 LTACARCVAAGSLDSASSGLEQISLLASPDGDIVQRIVAYFTEALADRVLKgWRPGLHKALNSTKLT--CAAEIILAQKLFFEYCPFLRLSYVIT 142
                     99*************************************************5668999999999887..599*********************** PP

            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                     NqaIle +ege+ vHiiD+   +++QW++Ll++L +R+egpp+lRiTg+++    +ke l +++ rL++ Ae+l++pf+f + ++++le+l++e+
  XP_027103018.1 143 NQAILETMEGEKVVHIIDLHCFEPAQWINLLEELKARQEGPPHLRITGIHE----QKEVLDQMAVRLQEAAEKLDIPFQFCP-MVSKLENLDIES 232
                     ***************************************************....9**************************.799********* PP

            GRAS 194 LrvkpgEalaVnlvlqlhrll..................................................desvsleserdevLklvkslsPkv 238
                     Lrvk+gEa+a+++vlqlh+ll                                                  d++ s + ++ ++L+++++lsPk+
  XP_027103018.1 233 LRVKSGEAVAISSVLQLHSLLaydddtmrrnspsvpnnsssvhlpgvlhmnprtlgdflerdvmslygaspDSQSSPPPKTLSFLNALWGLSPKL 327
                     ********************************************************************88755555555799************* PP

            GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                     +vv+e+e++hn + ++er+ eal++y+alfd+le++lpr+  er+k+E++l+g+ei++++aceg er++rhe+l kW  rle aGF++++ls++ 
  XP_027103018.1 328 MVVTEHESNHNCHGLMERVDEALKFYAALFDCLENTLPRAPVERQKIEKFLFGEEIKSIIACEGLERKARHEKLDKWIPRLEFAGFGKINLSYNG 422
                     *********************************************************************************************** PP

            GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +kqa ++l+ ++ dg++++eesg ++++W+d pL+svSaW
  XP_027103018.1 423 MKQAMRVLQSCNYDGFKIKEESGYFIICWHDYPLFSVSAW 462
                     **************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    
MLLVAGIAQE EGSSPLFFFL MSLSPSIGSP YTLLREMKSD ERGMWLFGFL TACARCVAAG  60
SLDSASSGLE QISLLASPDG DIVQRIVAYF TEALADRVLK GWRPGLHKAL NSTKLTCAAE  120
IILAQKLFFE YCPFLRLSYV ITNQAILETM EGEKVVHIID LHCFEPAQWI NLLEELKARQ  180
EGPPHLRITG IHEQKEVLDQ MAVRLQEAAE KLDIPFQFCP MVSKLENLDI ESLRVKSGEA  240
VAISSVLQLH SLLAYDDDTM RRNSPSVPNN SSSVHLPGVL HMNPRTLGDF LERDVMSLYG  300
ASPDSQSSPP PKTLSFLNAL WGLSPKLMVV TEHESNHNCH GLMERVDEAL KFYAALFDCL  360
ENTLPRAPVE RQKIEKFLFG EEIKSIIACE GLERKARHEK LDKWIPRLEF AGFGKINLSY  420
NGMKQAMRVL QSCNYDGFKI KEESGYFIIC WHDYPLFSVS AWGFKRY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-169GRAS family protein