PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027103016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 467aa MW: 52599.7 Da PI: 6.0663 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 407.5 | 1.3e-124 | 50 | 462 | 5 | 373 |
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 L++cA++v++g+l a++ L+++s laspdgd +qR++ayfteALa r+++ ++l kal++++ + +e + a+klf+e +P+l++s++++ XP_027103016.1 50 LTACARCVAAGSLDSASSGLEQISLLASPDGDIVQRIVAYFTEALADRVLKgWRPGLHKALNSTKLT--CAAEIILAQKLFFEYCPFLRLSYVIT 142 99*************************************************5668999999999887..599*********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 NqaIle +ege+ vHiiD+ +++QW++Ll++L +R+egpp+lRiTg+++ +ke l +++ rL++ Ae+l++pf+f + ++++le+l++e+ XP_027103016.1 143 NQAILETMEGEKVVHIIDLHCFEPAQWINLLEELKARQEGPPHLRITGIHE----QKEVLDQMAVRLQEAAEKLDIPFQFCP-MVSKLENLDIES 232 ***************************************************....9**************************.799********* PP GRAS 194 LrvkpgEalaVnlvlqlhrll..................................................desvsleserdevLklvkslsPkv 238 Lrvk+gEa+a+++vlqlh+ll d++ s + ++ ++L+++++lsPk+ XP_027103016.1 233 LRVKSGEAVAISSVLQLHSLLaydddtmrrnspsvpnnsssvhlpgvlhmnprtlgdflerdvmslygaspDSQSSPPPKTLSFLNALWGLSPKL 327 ********************************************************************88755555555799************* PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 +vv+e+e++hn + ++er+ eal++y+alfd+le++lpr+ er+k+E++l+g+ei++++aceg er++rhe+l kW rle aGF++++ls++ XP_027103016.1 328 MVVTEHESNHNCHGLMERVDEALKFYAALFDCLENTLPRAPVERQKIEKFLFGEEIKSIIACEGLERKARHEKLDKWIPRLEFAGFGKINLSYNG 422 *********************************************************************************************** PP GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +kqa ++l+ ++ dg++++eesg ++++W+d pL+svSaW XP_027103016.1 423 MKQAMRVLQSCNYDGFKIKEESGYFIICWHDYPLFSVSAW 462 **************************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence |
MLLVAGIAQE EGSSPLFFFL MSLSPSIGSP YTLLREMKSD ERGMWLFGFL TACARCVAAG 60 SLDSASSGLE QISLLASPDG DIVQRIVAYF TEALADRVLK GWRPGLHKAL NSTKLTCAAE 120 IILAQKLFFE YCPFLRLSYV ITNQAILETM EGEKVVHIID LHCFEPAQWI NLLEELKARQ 180 EGPPHLRITG IHEQKEVLDQ MAVRLQEAAE KLDIPFQFCP MVSKLENLDI ESLRVKSGEA 240 VAISSVLQLH SLLAYDDDTM RRNSPSVPNN SSSVHLPGVL HMNPRTLGDF LERDVMSLYG 300 ASPDSQSSPP PKTLSFLNAL WGLSPKLMVV TEHESNHNCH GLMERVDEAL KFYAALFDCL 360 ENTLPRAPVE RQKIEKFLFG EEIKSIIACE GLERKARHEK LDKWIPRLEF AGFGKINLSY 420 NGMKQAMRVL QSCNYDGFKI KEESGYFIIC WHDYPLFSVS AWGFKRY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-169 | GRAS family protein |