PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102885.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 470aa    MW: 53090.2 Da    PI: 6.2033
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4617.2e-141464671374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v++g+le+a+ +L ++s+la+pdgd+mqR+a+yfteALa r+++++++lykal++++ s   +see+ ++k+f+e +P+lk+++
  XP_027102885.1  46 LIHLLLTCANHVATGSLENANMALDQISHLATPDGDTMQRIASYFTEALADRVLKTWPGLYKALHSTRIS--VVSEEVLVRKMFFEFFPFLKVAF 138
                     689*************************************************************999887..699******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege++vHiiD+++s+++QW aLlq L++Rpegpp+lRiTgv++    +ke l ++++ L++ Ae+l++pf+fn+ ++++le+l+
  XP_027102885.1 139 VITNQAIIEAMEGEKMVHIIDLNASEPAQWRALLQDLSARPEGPPHLRITGVHQ----QKEILDQMAHILSEDAEKLDIPFQFNP-IVSKLENLD 228
                     ******************************************************....9**************************.7999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll........................................................desvsles..erdev 227
                     +e+Lrvk gEala+++vlqlh ll                                                            s++   + d++
  XP_027102885.1 229 VEKLRVKXGEALAISSVLQLHALLatdeemrkkspmvxkssnghhlqrvlqmnqgtlgellekdlvngyspssdsassspL---SSNAsxKLDSF 320
                     ***************************************************************************875431...3322446899* PP

            GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                     L++++ lsPk++vv+eq+++hn+++++er++e+l++y+alfd+le++ +r+s er kvE++l+g+e +n++aceg er+erhe+lekW +r++ a
  XP_027102885.1 321 LNALWXLSPKIMVVAEQDSNHNGANLMERLSESLYFYAALFDCLESTXSRTSVERLKVEKMLFGEEXKNIIACEGVERKERHEKLEKWIQRFDLA 415
                     *********************************************************************************************** PP

            GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     GF++v+ls++a+ qak+ll++ + dgy+++ee+g++v++W+dr+L+svSaWr
  XP_027102885.1 416 GFGNVALSYYAMLQAKRLLQNRSCDGYKIKEENGCIVICWQDRALFSVSAWR 467
                     ***************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MFQDDGSSSV TSSPLQMFPM MSLSPXLGSP YQWLKELKSE ERGLYLIHLL LTCANHVATG  60
SLENANMALD QISHLATPDG DTMQRIASYF TEALADRVLK TWPGLYKALH STRISVVSEE  120
VLVRKMFFEF FPFLKVAFVI TNQAIIEAME GEKMVHIIDL NASEPAQWRA LLQDLSARPE  180
GPPHLRITGV HQQKEILDQM AHILSEDAEK LDIPFQFNPI VSKLENLDVE KLRVKXGEAL  240
AISSVLQLHA LLATDEEMRK KSPMVXKSSN GHHLQRVLQM NQGTLGELLE KDLVNGYSPS  300
SDSASSSPLS SNASXKLDSF LNALWXLSPK IMVVAEQDSN HNGANLMERL SESLYFYAAL  360
FDCLESTXSR TSVERLKVEK MLFGEEXKNI IACEGVERKE RHEKLEKWIQ RFDLAGFGNV  420
ALSYYAMLQA KRLLQNRSCD GYKIKEENGC IVICWQDRAL FSVSAWRCRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein