PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102874.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 491aa MW: 54668.2 Da PI: 6.1983

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.6e-13	293	339	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h Er+RR +iN++++ Lr+l+P++ K++ a+++ A+ YI++L XP_027102874.1 293 RKHFTTERQRRVQINDKYQALRSLVPNP-----SKNDRASVVGDAIGYINEL 339 67***********************9.....7*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MLVESACFDP HPIQGGGLVG DGFSQTHVPN CSPSFSMEDH PYHQRNASQP QQQVVSAAAS 60 AAGMEMELQQ QLNIEMEHTN LQDMVHESSR NQILSSCDPS NWEDVNFIYH HQQQLQDHHQ 120 QQHQHMQQVD MQNIQHHNFS MPLPDTPYPP TPDLLNMLPL PRCSPSALLV PNTSISFANS 180 SAQKPSNFLS SLGLLGDLSG TDGVTTPSPV VYDPLLPVNL PPQPPLLREL IHSFPHGYNL 240 GGSRSDSLFT GVDDREASGC LFQDGDGRSY ENGVFEFTAD VKCLGKGRDG KGRKHFTTER 300 QRRVQINDKY QALRSLVPNP SKNDRASVVG DAIGYINELK RTVAELKILV EKKRCSRDRI 360 KRHKVEDGAE GAAVKTEDDL DQPYDGSSLR SSWLHRKSKS TEVDVRIIDD EVTVKLVQQK 420 RINCLLFVSK VLDELQLDLH HVAGGLIGDY YSFLFNSKIS EGSTVYAHAI ANKLIEVVDK 480 QYAAVQPTSS Y

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MLVESACFDP HPIQGGGLVG DGFSQTHVPN CSPSFSMEDH PYHQRNASQP QQQVVSAAAS  60
AAGMEMELQQ QLNIEMEHTN LQDMVHESSR NQILSSCDPS NWEDVNFIYH HQQQLQDHHQ  120
QQHQHMQQVD MQNIQHHNFS MPLPDTPYPP TPDLLNMLPL PRCSPSALLV PNTSISFANS  180
SAQKPSNFLS SLGLLGDLSG TDGVTTPSPV VYDPLLPVNL PPQPPLLREL IHSFPHGYNL  240
GGSRSDSLFT GVDDREASGC LFQDGDGRSY ENGVFEFTAD VKCLGKGRDG KGRKHFTTER  300
QRRVQINDKY QALRSLVPNP SKNDRASVVG DAIGYINELK RTVAELKILV EKKRCSRDRI  360
KRHKVEDGAE GAAVKTEDDL DQPYDGSSLR SSWLHRKSKS TEVDVRIIDD EVTVKLVQQK  420
RINCLLFVSK VLDELQLDLH HVAGGLIGDY YSFLFNSKIS EGSTVYAHAI ANKLIEVVDK  480
QYAAVQPTSS Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	6e-81	bHLH family protein