PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102720.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 374aa MW: 43143.2 Da PI: 5.086

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.4	3.5e-31	47	139	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+++++ed+e++++isws+n++sf ++d+ +f+ ++Lpk F+h nf+SFv QLn YgFkk++ e+ e+++++F++gk++ll++ XP_027102720.1 47 FLMKTFDMVEDPETNSIISWSSNSTSFTIWDQIKFTAELLPKNFRHGNFSSFVYQLNNYGFKKISWEK---------FEYENPWFQAGKRHLLKH 132 9***************************************************************99.........67************ PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 ikr++++ XP_027102720.1 133 IKRRNQQ 139 **985 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MQGKRKTIDD TGGDNGDGGG AGGYGGNTRG IGPLPRRRRV RSFPPPFLMK TFDMVEDPET 60 NSIISWSSNS TSFTIWDQIK FTAELLPKNF RHGNFSSFVY QLNNYGFKKI SWEKFEYENP 120 WFQAGKRHLL KHIKRRNQQC EYDSMIQPSC GSTDNLLKDR MEDQLETLMI EQHGLKVELE 180 KLNEKQKQMV NHFNKIEESI KVSEREKEEM VSQLLVQVFI QKLREKREMS KYEATKNQGL 240 DNSMSKEILA LVAEGNCSRH IDKNEQVQEE VMVIQTEGQT FCSPDNSGGS NEEKKATVTS 300 ETYQNRDFWK KMIEDDSEHE NGGHEELEEY HPKAILKLQD LIASNTLVQG ENQEEKPVSI 360 MEDQDGVSEN MHLE

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MQGKRKTIDD TGGDNGDGGG AGGYGGNTRG IGPLPRRRRV RSFPPPFLMK TFDMVEDPET  60
NSIISWSSNS TSFTIWDQIK FTAELLPKNF RHGNFSSFVY QLNNYGFKKI SWEKFEYENP  120
WFQAGKRHLL KHIKRRNQQC EYDSMIQPSC GSTDNLLKDR MEDQLETLMI EQHGLKVELE  180
KLNEKQKQMV NHFNKIEESI KVSEREKEEM VSQLLVQVFI QKLREKREMS KYEATKNQGL  240
DNSMSKEILA LVAEGNCSRH IDKNEQVQEE VMVIQTEGQT FCSPDNSGGS NEEKKATVTS  300
ETYQNRDFWK KMIEDDSEHE NGGHEELEEY HPKAILKLQD LIASNTLVQG ENQEEKPVSI  360
MEDQDGVSEN MHLE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	136	LKHIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51910.1	2e-25	HSF family protein