PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102623.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 1386aa MW: 154859 Da PI: 6.9257

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00082	1274	1297	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 +kC+ C +sF +k +L+ H+r XP_027102623.1 1274 HKCSieGCRMSFQTKAELVLHMRD 1297 799999****************96 PP
2	zf-C2H2	14.2	0.00013	1298	1321	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+Fs++ + ++H+r+H XP_027102623.1 1298 RCPvqGCGKRFSSHKYATSHQRVH 1321 79999*****************99 PP
3	zf-C2H2	11.5	0.0009	1357	1383	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H XP_027102623.1 1357 YKCKvdGCGLSFRFVSDFSRHRRKtgH 1383 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1386 aa Download sequence
MGAVEIPKWL EELPLAPEFR PTDTEFADPI AYISKIEKKA SAFGICKVIP PVPKPSKRYV 60 LYNLNKSLSK CPELGSEVNV SSSMNMNDGA EGSNGSEARA VFTTRHQELG QNGKRVKGAA 120 GNQLIGAPKQ VWQSGEVYTL EQFEAKSKNF AKSQLGVVKE VSPLVIEAMF WKAASEKPIY 180 VEYANDVPGS GFGEPEGSFR YFNRRRRRRR KRGTFDRNNQ GSSCNNDHVT NCSSTVNYSS 240 VDKDAQASNL HSEVSGASTS LPSMSLDQSE NFSDGKFSNA SNEMHGTAGW KLSNSSWNLQ 300 VIARSPGSLT RYMPDDIPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGSPKTWYSV 360 PGDYAFDFEE VVRLQAYGGN TDPLDALTLL GEKTTLFSPE VIVAAGIPCC RLVQNPGEFV 420 VTFPRAYHVG FSHGFNCGEA ANFSTPKWLT IAKEAAVRRA AMNYLPMLSH QQLLYLLTMS 480 FVSRVPRSLL PGARSSRLKD RQKEERELSV KKAFIEDILK ENHLLTILLQ KNSSYRVVLW 540 DVDLLPASSK DSELCSTVVT DGTQRREDSH PDNCSNQDLY TQMSLYMDTI TDFYVDDADD 600 IQNDYQVDSG TLPCVACGIL GFPFMAVVQP SSKXSRDLLP EDQAMTQQLG VCQPAGCKSL 660 DLDFRAESCI PETRKPVKKN INHPDEASPF AESSPSTCSH MEEDALSVDI NTSSFPVHVT 720 ASSAVKFDGW NLSTGYFRPQ LFCLEHAIET VELLRXKGGA NVLGICHSDF QKIKAHSAVV 780 AEEISIPFNY NEIPLGNASQ EDLYLIDHAI ENQEKDEGAQ DWTSKLNLNL RHCVKMRKNF 840 PSQKVKHALA LGGLFSDGVL HLKALKWQSR KSRSKRNADP TNFSKPSVSI QTEKVEEPVE 900 KSGSRMSRKL GQVMIQYYRK RHKSKPRGSE GAIKALVVSE KHPSDEISGA DSGNCKEKER 960 DMSMNTHVRV EGAGKGASGP TCLAYSRKSK LRNEGQKVVS GGGLNENSFE TYELVELNKN 1020 YDLLLKDSHK LSMINVAEET DENHDSVNSE NSAGSLGISV YDTESSEVMR EDEIWGCSHE 1080 EASEPAPSCP HADESSGERC NQQVETTVLD KCQMSSGEME KEISSMKGAD RERAVSSDVL 1140 TSNTSNPSLT EELEAPREMP ADDQQQRDNQ SCTLFENKEV DDAISTLEQF QHTEKMRSKR 1200 KREVDIQNED QPNFGSFSRS PCEGLRPRTK RDAAGDTTGA EKPFEDLSKG RKVNKHLNGS 1260 DLHKHKREQK RCSHKCSIEG CRMSFQTKAE LVLHMRDRCP VQGCGKRFSS HKYATSHQRV 1320 HDDDRPLKCP WKGCRMTFKW AWARTEHIRV HTGERPYKCK VDGCGLSFRF VSDFSRHRRK 1380 TGHYVN

Sequence ? help Back to Top

Protein Sequence Length: 1386 aa Download sequence

MGAVEIPKWL EELPLAPEFR PTDTEFADPI AYISKIEKKA SAFGICKVIP PVPKPSKRYV  60
LYNLNKSLSK CPELGSEVNV SSSMNMNDGA EGSNGSEARA VFTTRHQELG QNGKRVKGAA  120
GNQLIGAPKQ VWQSGEVYTL EQFEAKSKNF AKSQLGVVKE VSPLVIEAMF WKAASEKPIY  180
VEYANDVPGS GFGEPEGSFR YFNRRRRRRR KRGTFDRNNQ GSSCNNDHVT NCSSTVNYSS  240
VDKDAQASNL HSEVSGASTS LPSMSLDQSE NFSDGKFSNA SNEMHGTAGW KLSNSSWNLQ  300
VIARSPGSLT RYMPDDIPGV TSPMVYIGML FSWFAWHVED HELHSLNFLH TGSPKTWYSV  360
PGDYAFDFEE VVRLQAYGGN TDPLDALTLL GEKTTLFSPE VIVAAGIPCC RLVQNPGEFV  420
VTFPRAYHVG FSHGFNCGEA ANFSTPKWLT IAKEAAVRRA AMNYLPMLSH QQLLYLLTMS  480
FVSRVPRSLL PGARSSRLKD RQKEERELSV KKAFIEDILK ENHLLTILLQ KNSSYRVVLW  540
DVDLLPASSK DSELCSTVVT DGTQRREDSH PDNCSNQDLY TQMSLYMDTI TDFYVDDADD  600
IQNDYQVDSG TLPCVACGIL GFPFMAVVQP SSKXSRDLLP EDQAMTQQLG VCQPAGCKSL  660
DLDFRAESCI PETRKPVKKN INHPDEASPF AESSPSTCSH MEEDALSVDI NTSSFPVHVT  720
ASSAVKFDGW NLSTGYFRPQ LFCLEHAIET VELLRXKGGA NVLGICHSDF QKIKAHSAVV  780
AEEISIPFNY NEIPLGNASQ EDLYLIDHAI ENQEKDEGAQ DWTSKLNLNL RHCVKMRKNF  840
PSQKVKHALA LGGLFSDGVL HLKALKWQSR KSRSKRNADP TNFSKPSVSI QTEKVEEPVE  900
KSGSRMSRKL GQVMIQYYRK RHKSKPRGSE GAIKALVVSE KHPSDEISGA DSGNCKEKER  960
DMSMNTHVRV EGAGKGASGP TCLAYSRKSK LRNEGQKVVS GGGLNENSFE TYELVELNKN  1020
YDLLLKDSHK LSMINVAEET DENHDSVNSE NSAGSLGISV YDTESSEVMR EDEIWGCSHE  1080
EASEPAPSCP HADESSGERC NQQVETTVLD KCQMSSGEME KEISSMKGAD RERAVSSDVL  1140
TSNTSNPSLT EELEAPREMP ADDQQQRDNQ SCTLFENKEV DDAISTLEQF QHTEKMRSKR  1200
KREVDIQNED QPNFGSFSRS PCEGLRPRTK RDAAGDTTGA EKPFEDLSKG RKVNKHLNGS  1260
DLHKHKREQK RCSHKCSIEG CRMSFQTKAE LVLHMRDRCP VQGCGKRFSS HKYATSHQRV  1320
HDDDRPLKCP WKGCRMTFKW AWARTEHIRV HTGERPYKCK VDGCGLSFRF VSDFSRHRRK  1380
TGHYVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	209	RYFNRRRRRR
2	204	209	RRRRRR
3	204	210	RRRRRRR
4	204	212	RRRRRRRKR
5	205	210	RRRRRR
6	205	212	RRRRRRKR
7	205	211	RRRRRRR
8	205	213	RRRRRRRKR
9	206	212	RRRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein