PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102549.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 262aa    MW: 29225.6 Da    PI: 8.6197
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000185476123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_027102549.1 54 YSCTFCRREFRSAQALGGHMNVH 76
                    99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MQYMMWMKSK QLLNSRFQSS MGSFNTSSSS WEEQAFAEDA AGPLGGFVWP PRSYSCTFCR  60
REFRSAQALG GHMNVHRRDR ARLKQSLCSD QTPSSAPEIQ QSLQAGDSSS PFSSVSRASA  120
TVISQETSSE EAYASPFSSS ITKEQQRLFP YLSSPDSRNG IRKGARKEEL LVLDRRDHAA  180
VETNLSVGIN SHNTQGSSVH NEEMAINSKR LRSNASFPVY HKPCSSDRFP FQYEMLRMKM  240
SGASSIEDID LELRLGDPPA VK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-27C2H2 family protein