PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027102498.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 166aa    MW: 18639.7 Da    PI: 10.7119
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027102498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.6e-202761135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C+ttkTplWR+gp g+k+LCnaCG+++rkk++
  XP_027102498.1 27 CVDCKTTKTPLWRSGPAGPKSLCNACGIRHRKKRS 61
                    ********************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MDPNKKVEEE ILPPQEMITR TADEKCCVDC KTTKTPLWRS GPAGPKSLCN ACGIRHRKKR  60
SATGTSPATS TATVGLDKEE EKIKKEKHEE TIVKKKRRAN IRDGKCGKLS VGWRQRFRAF  120
GQGVVLYQRQ RSPVLRKRQS IHHRKLGEVE QAAVLLMALS CGSVFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15787RKKRSATGTSPATSTATVGLDKEEEKIKKEK
29498KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-25GATA family protein