PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027102330.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 384aa MW: 42163.4 Da PI: 9.3495

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027102330.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	96.3	5.9e-30	49	149	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ + k +i++l+ ++ ++ s+++ ++ +++ss++ XP_027102330.1 49 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATKSEIDKLPPLQIQAGSFSQFHQAIALSQHSSATssnlphffc 143 79*************************************************************88888777444444444433333333445555 PP TCP 89 .....k 89 XP_027102330.1 144 anpsyM 149 554440 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MIMNSKDKAF QTKQEGDVND SKFSKSASTS RPWAGFRNPR IVRVSRSFGG KDRHSKVCTV 60 RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVVDWLIDA TKSEIDKLPP LQIQAGSFSQ 120 FHQAIALSQH SSATSSNLPH FFCANPSYMK DVGAPSFLSN KQGLKINDHI HGNSQTILDR 180 SRCWNPDVAV NRKEAEKEAA AGKDKWIASN EQEGMEGYAA QLTAQNFFPV ANLSSFPSLL 240 PNPLPYNPYY QWEASNLSLS QLGGHSNIPM QPEDSQSHNA LSLGSSMALP SGSQLCFCPS 300 AATIPTILPS LPPYMTASVE SDPRQSNNFQ FLSSSTQQVQ ANSLMPTLHL ISSPLKSLTL 360 NSNPKILHLQ ENSKNHPNKG DSGS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MIMNSKDKAF QTKQEGDVND SKFSKSASTS RPWAGFRNPR IVRVSRSFGG KDRHSKVCTV  60
RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVVDWLIDA TKSEIDKLPP LQIQAGSFSQ  120
FHQAIALSQH SSATSSNLPH FFCANPSYMK DVGAPSFLSN KQGLKINDHI HGNSQTILDR  180
SRCWNPDVAV NRKEAEKEAA AGKDKWIASN EQEGMEGYAA QLTAQNFFPV ANLSSFPSLL  240
PNPLPYNPYY QWEASNLSLS QLGGHSNIPM QPEDSQSHNA LSLGSSMALP SGSQLCFCPS  300
AATIPTILPS LPPYMTASVE SDPRQSNNFQ FLSSSTQQVQ ANSLMPTLHL ISSPLKSLTL  360
NSNPKILHLQ ENSKNHPNKG DSGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	5e-46	TCP family protein