PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 208aa    MW: 23628.7 Da    PI: 8.0643
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.4e-10629427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    ++C++++r+G C yG rC F+H++
  XP_027101990.1  6 KECPYYMRNGSCGYGTRCVFHHPE 29
                    58********************96 PP

2zf-CCCH29.21.6e-09131157127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C +f++tG Ck+ + C+F+H++
  XP_027101990.1 131 PGQPECAYFMKTGDCKFKSACRFHHPK 157
                     5789*********************96 PP

3zf-CCCH28.33.1e-09173198126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++ +Cr++ r+G+Ck+G  C F H+
  XP_027101990.1 173 PGRNICRHYERFGICKFGRVCLFDHP 198
                     57899********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MRLGGKECPY YMRNGSCGYG TRCVFHHPEP SSMGGLDLQK SSLNEASQPN QVPWSTRPLS  60
STLSYRNDYS SHTIANSVPQ WMHGHSEFNE CQAEEVPQQR SRNTYLVSGA ARADMLEQDI  120
PVQVEEFPER PGQPECAYFM KTGDCKFKSA CRFHHPKGQP TCILSEKGLP LRPGRNICRH  180
YERFGICKFG RVCLFDHPVH PNLSTFKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-49C3H family protein