PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027101989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 232aa MW: 26075.4 Da PI: 8.2246 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.4 | 1.6e-10 | 6 | 29 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C++++r+G C yG rC F+H++ XP_027101989.1 6 KECPYYMRNGSCGYGTRCVFHHPE 29 58********************96 PP | |||||||
2 | zf-CCCH | 29 | 1.9e-09 | 155 | 181 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +f++tG Ck+ + C+F+H++ XP_027101989.1 155 PGQPECAYFMKTGDCKFKSACRFHHPK 181 5789*********************96 PP | |||||||
3 | zf-CCCH | 28 | 3.6e-09 | 197 | 222 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++ +Cr++ r+G+Ck+G C F H+ XP_027101989.1 197 PGRNICRHYERFGICKFGRVCLFDHP 222 57899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MRLGGKECPY YMRNGSCGYG TRCVFHHPEP SSMGGLDLQK SSLNGKPIRH SAHSLGSPSI 60 DSAPLHLSEA SQPNQVPWST RPLSSTLSYR NDYSSHTIAN SVPQWMHGHS EFNECQAEEV 120 PQQRSRNTYL VSGAARADML EQDIPVQVEE FPERPGQPEC AYFMKTGDCK FKSACRFHHP 180 KGQPTCILSE KGLPLRPGRN ICRHYERFGI CKFGRVCLFD HPVHPNLSTF KD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 3e-49 | C3H family protein |