PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101899.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 348aa MW: 36417.5 Da PI: 8.5334

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.8	1.9e-38	72	146	2	76
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceae 76 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+ XP_027101899.1 72 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAA 146 789******************************************************************776222 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MDPKGSKPQP PQDAVGLPSF LNANHNNSSI MSETNHNNSP TPPPAEIKDF RICIADKQEN 60 TTTSAKKPHQ LAPKRSSNKD RHTKVEGRGR RIRMPALCAA RIFQLTRELG HKSDGETIQW 120 LLQQAEPSII AATGTGTIPA SALAAAAAGA GGSVSMSAGL HPPKISAELG AHHPPHMDIA 180 GSGQGAGSTS ASRTNWPMVG GSLLRPHMGM PTTTAGIWPP TSASGAVSGF GFQSSSSPAP 240 AATSLGTECS NYLHKLGFPG FDLPAATNNM GPMSFTSILG AATDQQQQLP GLELGLSQDG 300 HVGVLNPQTL SQIYQHMGQA RAHQQQQQHQ DQQQQQPSPN DNSQGSGQ

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MDPKGSKPQP PQDAVGLPSF LNANHNNSSI MSETNHNNSP TPPPAEIKDF RICIADKQEN  60
TTTSAKKPHQ LAPKRSSNKD RHTKVEGRGR RIRMPALCAA RIFQLTRELG HKSDGETIQW  120
LLQQAEPSII AATGTGTIPA SALAAAAAGA GGSVSMSAGL HPPKISAELG AHHPPHMDIA  180
GSGQGAGSTS ASRTNWPMVG GSLLRPHMGM PTTTAGIWPP TSASGAVSGF GFQSSSSPAP  240
AATSLGTECS NYLHKLGFPG FDLPAATNNM GPMSFTSILG AATDQQQQLP GLELGLSQDG  300
HVGVLNPQTL SQIYQHMGQA RAHQQQQQHQ DQQQQQPSPN DNSQGSGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	7e-56	TCP family protein