PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101347.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 219aa MW: 24500.6 Da PI: 4.0256

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.5	4e-37	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrr+C+ +Cv+apyf eq +++f++vh++FGasnv+kll +lp ++r +a+ ++ yeA ar++dP+yG+v++i++l+qq+++lk+e+ XP_027101347.1 7 SCGACKFLRRRCTIECVFAPYFGYEQaASHFEAVHRVFGASNVSKLLLNLPVQNRAEAAITISYEALARMQDPIYGCVAHIFALEQQVACLKEEI 101 6*********************9978***************************************************************** PP DUF260 95 allkee 100 ++++++ XP_027101347.1 102 EMIETQ 107 998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MTGMGSSCGA CKFLRRRCTI ECVFAPYFGY EQAASHFEAV HRVFGASNVS KLLLNLPVQN 60 RAEAAITISY EALARMQDPI YGCVAHIFAL EQQVACLKEE IEMIETQMAS LAVDVTSSCE 120 SYNVADYSNP EIAFGCDQYM NLANFINQQQ MELDPITYTE VKACDDSQMM VQFPPGNGWE 180 DAISQLSSSN SNLSEPLFQE FTQSIYEQCL WPEYCSTLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-56	LBD family protein