PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027101331.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 382aa MW: 41234.2 Da PI: 6.7823

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027101331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.3	9e-30	185	245	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK++ +s+fprsY+rCt++ +Cp+kk+v+r ++dp+++e+tY+g+H+++ XP_027101331.1 185 EDGYTWRKYGQKDILNSRFPRSYFRCTHQklyQCPAKKQVQRLDDDPNIFEVTYRGDHTCH 245 7**************************9999************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MDETIDLILQ GCQMAKSLEG SLPNMTNQPE SLISSCDEII RVFSRAKESV SKAQLAVLPE 60 SHKSQLLGIS SGVQEWLRDS SIPTRAMDLL REQQFLPDDT KSKGVIGGGL DEMVVGQMGG 120 GGRFCGRHSL ERAREIEPPA VEAASSGGSR ASASQRQRKS RDGGVERRVE RVPAPQMGNT 180 EIPPEDGYTW RKYGQKDILN SRFPRSYFRC THQKLYQCPA KKQVQRLDDD PNIFEVTYRG 240 DHTCHLSSTA PSVPPPLPVE RREARSMMQQ ATAAAIHPLP NPAAATTLSM SQWLTIRDFG 300 LAVAGGGVAG STSSTVNMGG GSSTSGGAAA GPSTSRYGRD VDYPVADMAD VMFNSGSSSS 360 TSMDLIFSSM DDKWPDSADK KN

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MDETIDLILQ GCQMAKSLEG SLPNMTNQPE SLISSCDEII RVFSRAKESV SKAQLAVLPE  60
SHKSQLLGIS SGVQEWLRDS SIPTRAMDLL REQQFLPDDT KSKGVIGGGL DEMVVGQMGG  120
GGRFCGRHSL ERAREIEPPA VEAASSGGSR ASASQRQRKS RDGGVERRVE RVPAPQMGNT  180
EIPPEDGYTW RKYGQKDILN SRFPRSYFRC THQKLYQCPA KKQVQRLDDD PNIFEVTYRG  240
DHTCHLSSTA PSVPPPLPVE RREARSMMQQ ATAAAIHPLP NPAAATTLSM SQWLTIRDFG  300
LAVAGGGVAG STSSTVNMGG GSSTSGGAAA GPSTSRYGRD VDYPVADMAD VMFNSGSSSS  360
TSMDLIFSSM DDKWPDSADK KN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	2e-44	WRKY family protein