PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027101027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 365aa MW: 39699.7 Da PI: 6.6825 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.1 | 3.5e-09 | 41 | 63 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC+f+ + G C+yGd+C++ H+ XP_027101027.1 41 EKLCNFWVQ-GNCSYGDKCRYLHS 63 579******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence |
MDVDGSKRIF QRLGPGAATA SSSGSNSNNK QQKGGVIKKT EKLCNFWVQG NCSYGDKCRY 60 LHSWSTGDCF SLLTQLEGHE KVVTGIALPS GSDRLYTGSK DETVRVWXCQ SGQCTGVISL 120 GGEIGCMRSE GPWVFVGLTN FVRAWNTQTT TDLSLSGPVG QVYALVVGND LLFAGVQDGT 180 ILAWKFNTAT NSFEPAASLK GHNLAVVTLV VGANRLYSGS MDHSIRVWSL ETLQCLQTLT 240 DHSNVVMSVL CWDQFLLSCS LDKTVKVWAA TELGSLEVTY THNEEHGLLT LCGMHDLDGK 300 PVLLCSCNDN CIRVYDLPSF CERGKIFAKQ EVRSIQTGPP GLFFTGDGTG QVKVWQWSTE 360 STSTK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 0.0 | C3H family protein |