PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 365aa    MW: 39699.7 Da    PI: 6.6825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101027.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.5e-094163326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++lC+f+ + G C+yGd+C++ H+
  XP_027101027.1 41 EKLCNFWVQ-GNCSYGDKCRYLHS 63
                    579******.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MDVDGSKRIF QRLGPGAATA SSSGSNSNNK QQKGGVIKKT EKLCNFWVQG NCSYGDKCRY  60
LHSWSTGDCF SLLTQLEGHE KVVTGIALPS GSDRLYTGSK DETVRVWXCQ SGQCTGVISL  120
GGEIGCMRSE GPWVFVGLTN FVRAWNTQTT TDLSLSGPVG QVYALVVGND LLFAGVQDGT  180
ILAWKFNTAT NSFEPAASLK GHNLAVVTLV VGANRLYSGS MDHSIRVWSL ETLQCLQTLT  240
DHSNVVMSVL CWDQFLLSCS LDKTVKVWAA TELGSLEVTY THNEEHGLLT LCGMHDLDGK  300
PVLLCSCNDN CIRVYDLPSF CERGKIFAKQ EVRSIQTGPP GLFFTGDGTG QVKVWQWSTE  360
STSTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein