PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027100221.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 642aa    MW: 69058.4 Da    PI: 5.5672
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027100221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.42.4e-1372586401374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAea+++++++la+al++++  la +++ +m+++a+yf+eALa+r++r        l p++ +++  ++    +  f+e++P++kf+h
  XP_027100221.1 258 LVHALMACAEAIQQENMKLAEALVKHIGFLAVSQAGAMRKVATYFAEALARRIYR--------LYPTSPHDSAFTDL--LQMHFYETCPYIKFAH 342
                     689****************************************************........44444443334444..4446************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+++++rvH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g+p++++++ l+e+g++La++A+ ++v+fef+ +va++l+dl+
  XP_027100221.1 343 FTANQAILEAFANKNRVHVIDFSMKQGMQWPALLQALALRPGGPPSFRLTGIGPPSHDNTDHLQEVGWKLAQLADCIKVEFEFRGFVANSLADLD 437
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........... 274
                      +++++++gE++aVn++++lh+ll++++++e+    vL++vk+l+P++++vveqea+hn++ Fl+rf+e+l+yys+lfdsle             
  XP_027100221.1 438 ASMFDIREGETVAVNSIFELHQLLSRPGAIEK----VLSAVKELKPEILTVVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCgsgggggsggn 528
                     ************************99999999....*********************************************98889********* PP

            GRAS 275 ............lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                                 + + s++++++++++lgr+i+nvvaceg +r+erhetl++Wr r+++aGF++v+l+++a kqa++ll+ ++ ++gyrvee++g
  XP_027100221.1 529 ggvdggsssgggV-AVSDQDKVMSEVYLGRQICNVVACEGVDRVERHETLAQWRTRFGSAGFEAVHLGSNAFKQASMLLALFAgGNGYRVEENNG 622
                     ******9999853.56799999************************************************************************* PP

            GRAS 357 slvlgWkdrpLvsvSaWr 374
                     +l+lgW++rpL+++SaW+
  XP_027100221.1 623 CLMLGWHTRPLIATSAWK 640
                     *****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    
MKRNHPKLQQ STAAAARVQV QESSYSGGGG SSTGSGSCYS TMASCSSAGG GSQSKGKMWV  60
DESDQQDDEL LAVLGYKVKA SDMAEVAQKI EQLEEVFGNA ENDSLSHLVS ETVHYNPSDL  120
SSWLGSMISE LYPDMSSIPD SSAISSLDNC SSNNTTSNSA RTLHNYPNSN RVIFDDSSFD  180
SDLTAIPGKA AVYPQIQQLP SPVSVSPGSV QPPSKRMKPS SQMGGWGTPS ESIITNSRAV  240
ASTRPVVLVD SQENGIRLVH ALMACAEAIQ QENMKLAEAL VKHIGFLAVS QAGAMRKVAT  300
YFAEALARRI YRLYPTSPHD SAFTDLLQMH FYETCPYIKF AHFTANQAIL EAFANKNRVH  360
VIDFSMKQGM QWPALLQALA LRPGGPPSFR LTGIGPPSHD NTDHLQEVGW KLAQLADCIK  420
VEFEFRGFVA NSLADLDASM FDIREGETVA VNSIFELHQL LSRPGAIEKV LSAVKELKPE  480
ILTVVEQEAN HNGPVFLDRF TESLHYYSTL FDSLEGCGSG GGGGSGGNGG VDGGSSSGGG  540
VAVSDQDKVM SEVYLGRQIC NVVACEGVDR VERHETLAQW RTRFGSAGFE AVHLGSNAFK  600
QASMLLALFA GGNGYRVEEN NGCLMLGWHT RPLIATSAWK LS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein