PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027100050.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 984aa MW: 108829 Da PI: 7.013

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027100050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131	4.1e-41	182	259	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adl++ak+yhrrhkvCe+hska+ +lv++++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ XP_027100050.1 182 VCQVEDCKADLTKAKDYHRRHKVCEMHSKASRALVANVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQP 259 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence
MEARTRLGLG GQAELLTRAV GSGDSKAAAN KRSNLEWDLN DWKWDEDLFL ATPLINSSTT 60 SPLINYHHQQ SRHFFPLETG GVNNHHHHRD VAARSSSSTS SSCSDEFKNL GGGVGAGSRR 120 ELDKRRRVLV VRDDNLEDEA APASLALKLN SRGGRDCYTP ECERYASGKK TKAAATAASR 180 AVCQVEDCKA DLTKAKDYHR RHKVCEMHSK ASRALVANVM QRFCQQCSRF HALQEFDEGK 240 RSCRRRLAGH NKRRRKTQPD PMANETSSND SQASGYLLMC IVKILSHIHS GKTNQTDDQE 300 LLSHLLRSLG GHGALHGDKD ISRLLQLPQN FPNNGAEMVS ALLANGTQGL PISKHPEMSQ 360 NILHNRDVQV EDLPTSSSQP TQSSVAYVQV NENHVERNKL NNFDLNDAYI DLEAAIEDLE 420 RSPVPVDVAT SNLEYHSWMR QNSHQSSPPQ TSGNSDSASA PSPSSSCADA RSRTDRIVFK 480 LFGKQPSDFP GSLRGQILDW LSHSPTDIES YIRPGCIVLT IYLCTSVLAW EELSHNLGSS 540 LSRLLNVSDD GSFWRTGWIY ARVQNRIVFI CSGRIVVETS LPSQSSYYGA IVSVKPIAVP 600 PSERAEFTIT GVNLSRPSTR ILGALRGSYV LFEDNGPSLE HIDSFKEHDE LQCLNFACSI 660 PVVTGRGFLE LEDLGLSSSF FPFIVAEKDV CSEICMLESE MELPETDCLG VKTESRKLAM 720 DFIHEFGWLL HRSQLKSKLG HSDQNSHPFA FTRFKWIIQF SADHGWCAVV KKLLDLLLDG 780 NIGXQESSLV GSEGSPLFRP DAVGPAGLTP LHVAAGTDGS EDVLSALTND PGQVAVEAWK 840 NARDNNGFTP EDYARLRGHY SYVHLVQRKI HKKILVGHVA VVDIPNAVSS GRTKQNEEEE 900 ARKTSFEIAR SEIGSAELHR CRLCDRKFVA TGGGNGSPLY RPGMLSMVAI AAVCVCVALL 960 FKSSPEVLFV FRPFRWEMLD YGSW

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence

MEARTRLGLG GQAELLTRAV GSGDSKAAAN KRSNLEWDLN DWKWDEDLFL ATPLINSSTT  60
SPLINYHHQQ SRHFFPLETG GVNNHHHHRD VAARSSSSTS SSCSDEFKNL GGGVGAGSRR  120
ELDKRRRVLV VRDDNLEDEA APASLALKLN SRGGRDCYTP ECERYASGKK TKAAATAASR  180
AVCQVEDCKA DLTKAKDYHR RHKVCEMHSK ASRALVANVM QRFCQQCSRF HALQEFDEGK  240
RSCRRRLAGH NKRRRKTQPD PMANETSSND SQASGYLLMC IVKILSHIHS GKTNQTDDQE  300
LLSHLLRSLG GHGALHGDKD ISRLLQLPQN FPNNGAEMVS ALLANGTQGL PISKHPEMSQ  360
NILHNRDVQV EDLPTSSSQP TQSSVAYVQV NENHVERNKL NNFDLNDAYI DLEAAIEDLE  420
RSPVPVDVAT SNLEYHSWMR QNSHQSSPPQ TSGNSDSASA PSPSSSCADA RSRTDRIVFK  480
LFGKQPSDFP GSLRGQILDW LSHSPTDIES YIRPGCIVLT IYLCTSVLAW EELSHNLGSS  540
LSRLLNVSDD GSFWRTGWIY ARVQNRIVFI CSGRIVVETS LPSQSSYYGA IVSVKPIAVP  600
PSERAEFTIT GVNLSRPSTR ILGALRGSYV LFEDNGPSLE HIDSFKEHDE LQCLNFACSI  660
PVVTGRGFLE LEDLGLSSSF FPFIVAEKDV CSEICMLESE MELPETDCLG VKTESRKLAM  720
DFIHEFGWLL HRSQLKSKLG HSDQNSHPFA FTRFKWIIQF SADHGWCAVV KKLLDLLLDG  780
NIGXQESSLV GSEGSPLFRP DAVGPAGLTP LHVAAGTDGS EDVLSALTND PGQVAVEAWK  840
NARDNNGFTP EDYARLRGHY SYVHLVQRKI HKKILVGHVA VVDIPNAVSS GRTKQNEEEE  900
ARKTSFEIAR SEIGSAELHR CRLCDRKFVA TGGGNGSPLY RPGMLSMVAI AAVCVCVALL  960
FKSSPEVLFV FRPFRWEMLD YGSW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	128	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein