PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027099930.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 412aa MW: 44123.9 Da PI: 7.5034

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027099930.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.2	8.4e-40	78	201	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ XP_027099930.1 78 PKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSISAPlirnsyln 172 799*****************************************************************999766777777663333355555556 PP TCP 89 ............................k 89 XP_027099930.1 173 qnlgisqlrameeshsqqqrrifypgvsL 201 66666555444444444444444444441 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MSMDADNAHL VVNAIRRSNF PLQLLEKRDL HQPSNCSTSI YPTLAIGSNS TTSTTPVDAA 60 ETSGADRLEA AANKKTQPKR TSTKDRHTKV EGRGRRIRMP ATCAARVFQL TKELGHKSDG 120 ETIEWLLQQA EPAVIAATGT GTIPANFTSL NISLRSSGSS ISAPLIRNSY LNQNLGISQL 180 RAMEESHSQQ QRRIFYPGVS LSSAENNNSS MSFNFPSESM NVNDMLHAKQ EVRDQAACLD 240 VSDRRIKRRP DEEDLTCLQN HIGNYMVQSS SGSIAASHQG QVQAAAFLMV TNNPSNTSTS 300 QLIRGPDSLW TFPSSMTGTN HNLLHRGGGA SMSSNGLHFM NFPTSMALLP GVHGANNGGG 360 SSGVFEGQSG MIAGLNSLRP AVPGGGASEA NLHLGGEEDW HDATTSTTTH HS

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MSMDADNAHL VVNAIRRSNF PLQLLEKRDL HQPSNCSTSI YPTLAIGSNS TTSTTPVDAA  60
ETSGADRLEA AANKKTQPKR TSTKDRHTKV EGRGRRIRMP ATCAARVFQL TKELGHKSDG  120
ETIEWLLQQA EPAVIAATGT GTIPANFTSL NISLRSSGSS ISAPLIRNSY LNQNLGISQL  180
RAMEESHSQQ QRRIFYPGVS LSSAENNNSS MSFNFPSESM NVNDMLHAKQ EVRDQAACLD  240
VSDRRIKRRP DEEDLTCLQN HIGNYMVQSS SGSIAASHQG QVQAAAFLMV TNNPSNTSTS  300
QLIRGPDSLW TFPSSMTGTN HNLLHRGGGA SMSSNGLHFM NFPTSMALLP GVHGANNGGG  360
SSGVFEGQSG MIAGLNSLRP AVPGGGASEA NLHLGGEEDW HDATTSTTTH HS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	5e-45	TCP family protein