PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027099792.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 503aa MW: 54506.5 Da PI: 6.926

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027099792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.6	4e-06	14	53	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e+ ++l+C+ ++ lC C + H+ H XP_027099792.1 14 VPCDFCNEQTAILYCRADSAKLCLLCDHHVHSAnalsrkH 53 57**************************999544555555 PP
2	zf-B_box	26.6	1.2e-08	56	101	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ +++++ C +++ lC+dC H H+++pl XP_027099792.1 56 SQICDNCASEPVSVRCATDNLVLCQDCDWDAHATsavsaaHDRIPL 101 579*************************999966888888888775 PP
3	CCT	62.4	1.4e-21	455	498	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k R+++K+irYesRKa+A++R+RvKGrFvk++ XP_027099792.1 455 RGNAMQRYKEKKKMRRYDKHIRYESRKARADTRKRVKGRFVKAS 498 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MVSPKRCSLA ESSVPCDFCN EQTAILYCRA DSAKLCLLCD HHVHSANALS RKHLRSQICD 60 NCASEPVSVR CATDNLVLCQ DCDWDAHATS AVSAAHDRIP LDPFSGCPSA LELASAWGLE 120 LQDKKPSQPP NWFDVAPAAP TAGGFLDSSW TLPKEVSVSP SVLLQDLMVP TDNNNPSSAV 180 IFSNCGPDLM KKHTSPSCGK QRLVIMKQLM GLLERDMADG GGGEELGPGT PNASGGGCCG 240 VWQGNEEVRG LGNGGDGVVG IVNQQFQPQQ HQRQQEQQNA PFMSLLMMQT PAIPKERDRT 300 VARNMWTTTA CEPSTQIWDF NLGQLRGNDE SNTLEVGYSA NEVGFMMKSY SELLKEPSSA 360 TTRGLELSGL NCSIVNEDMA AFNNSNNPIA SQGPATSESN NLPIGRATSG SGLGKRKCYG 420 GLKDVDLMEQ TVLVKSESTT AAAAKVDMEL LAKNRGNAMQ RYKEKKKMRR YDKHIRYESR 480 KARADTRKRV KGRFVKASDA PDG

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MVSPKRCSLA ESSVPCDFCN EQTAILYCRA DSAKLCLLCD HHVHSANALS RKHLRSQICD  60
NCASEPVSVR CATDNLVLCQ DCDWDAHATS AVSAAHDRIP LDPFSGCPSA LELASAWGLE  120
LQDKKPSQPP NWFDVAPAAP TAGGFLDSSW TLPKEVSVSP SVLLQDLMVP TDNNNPSSAV  180
IFSNCGPDLM KKHTSPSCGK QRLVIMKQLM GLLERDMADG GGGEELGPGT PNASGGGCCG  240
VWQGNEEVRG LGNGGDGVVG IVNQQFQPQQ HQRQQEQQNA PFMSLLMMQT PAIPKERDRT  300
VARNMWTTTA CEPSTQIWDF NLGQLRGNDE SNTLEVGYSA NEVGFMMKSY SELLKEPSSA  360
TTRGLELSGL NCSIVNEDMA AFNNSNNPIA SQGPATSESN NLPIGRATSG SGLGKRKCYG  420
GLKDVDLMEQ TVLVKSESTT AAAAKVDMEL LAKNRGNAMQ RYKEKKKMRR YDKHIRYESR  480
KARADTRKRV KGRFVKASDA PDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	5e-92	CO-like family protein