PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027099690.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 462aa MW: 51608.8 Da PI: 9.6066

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027099690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.3e-08	142	183	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE + l d+++++ + + Ia ++++ Rt +++ksr+++ XP_027099690.1 142 WTKEETDELFDLCERFDLR-FIVIADRFPTSRTVEELKSRYYS 183 *****************.*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MDAKDILLGL PKPTTTPTPL GHQLLPLPAD KKSRPPKESQ RKPDGISREV YALTGGLAPL 60 MPSVDVNHLK RRAQSENEKI TWQWLPFTSS ARKDNLQLYH WVRVVNGVPP SGDYSFAKYN 120 KSVDVIKYTD DEYEKHLTDP MWTKEETDEL FDLCERFDLR FIVIADRFPT SRTVEELKSR 180 YYSVCRAILI ARAPAPGDIA GHPLVKDPYN ISQDVERKRA LSMVLSQTKQ QERRDAEVLA 240 EAKRISEARK AAKGTDELEV PAMTDTVPDD NDGAAAAVDS LSPSPNAQFT SGAIAPPVSE 300 IASTLASLRM MRVYLRTHAL EQMVQAASSS AGLRTIKRVE QTLQDLGVNL KPKVPTKAVC 360 AEHLELRKEI LILLNLQKQL QYKEAEGSSY RDGLYAETPG TPPKRVQRAV EQDRTFVPDS 420 FSFGGERMGK RDQKRKAPGR LLEGPPSPAQ SKRPRKFKAS DG

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MDAKDILLGL PKPTTTPTPL GHQLLPLPAD KKSRPPKESQ RKPDGISREV YALTGGLAPL  60
MPSVDVNHLK RRAQSENEKI TWQWLPFTSS ARKDNLQLYH WVRVVNGVPP SGDYSFAKYN  120
KSVDVIKYTD DEYEKHLTDP MWTKEETDEL FDLCERFDLR FIVIADRFPT SRTVEELKSR  180
YYSVCRAILI ARAPAPGDIA GHPLVKDPYN ISQDVERKRA LSMVLSQTKQ QERRDAEVLA  240
EAKRISEARK AAKGTDELEV PAMTDTVPDD NDGAAAAVDS LSPSPNAQFT SGAIAPPVSE  300
IASTLASLRM MRVYLRTHAL EQMVQAASSS AGLRTIKRVE QTLQDLGVNL KPKVPTKAVC  360
AEHLELRKEI LILLNLQKQL QYKEAEGSSY RDGLYAETPG TPPKRVQRAV EQDRTFVPDS  420
FSFGGERMGK RDQKRKAPGR LLEGPPSPAQ SKRPRKFKAS DG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein