PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027099558.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 958aa MW: 107149 Da PI: 5.963

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027099558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	172.1	7.9e-54	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwlk+ e++ iL+n+e+ +t+e++++p sgsl+L+n++++r+frkDG+sw++k+dg+tv E+he+LKvg+ve+l+cyYah+e+np+fq XP_027099558.1 12 VREaQSRWLKPAEVLFILQNHENQMITNEPPQKPGSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPNFQ 106 45669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhyle 116 rr+yw+L+ ++e+ivlvhy++ XP_027099558.1 107 RRSYWMLNPAYEHIVLVHYRD 127 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence
MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNE PPQKPGSGSL FLFNKRVLRF 60 FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI 120 VLVHYRDISE ARNNAGTISQ FSPISSSTFS QSPISGNTQQ LGSSPLLGES YEQIHNLSSP 180 GSVEFSSSVV IKSNGMNYSQ DIERTEEVTS SSSHDISQAL RRLEEQLSLN DDRLEEIGNC 240 YTQNENSHDS EKSTQGQTPS VPGQGYEIEH QQQSLGHEDW TEMLDGCNSS EHVLAQVRHV 300 DRNGVLLDEW TKELVAEQDG YTWLDYGGTN AQDVSLPVAK EVQNLAYPAY SAAVKTYMTN 360 PDNYTTLFDH NQIGISLEED LGLTIAQKQK FTIQEISPEW VYASETTKVF IIGSFLCDPL 420 DAAWTCMFGD IEVPVQIIQE GVICCHAPPH SPGKVTICVT SGNRESCSEV REFEYRVKPT 480 VCSHCSQPQR EASRSPEEML LLVRFVQLLL SNPSMQKGDT SESGVDLLGK SRADEDSWGQ 540 VIEALLAGTS TLSITTDWLL EELVKDKLQN WLSSKSQDDN MPCCSLSKKE QGVIHIISGL 600 GFEWALHPIL KSGVNVNFRD INGWTALHWA ARFGREKMVA ALIAAGASAG AVTDPNSKDP 660 TGKTAASVAA TWGHKGLAGY LSEVALTSHL FSLTLEESEL SKGSADVEAE RTLINIPKTS 720 PTTNEDQLSL KDSLAAARNA AQAAARIQSA FRAHSFRRRE QKEFAISAAS STSRDEYGIL 780 LSDIPELSAA SKFAFRNSRD YNSAALSIQK KYRGWKGRKD FLAFRQKVVK IQAHVRGYQV 840 RKNYKVCWAV GILEKVVLRW RRRGVGLRGF RLETDAIDES EDEDILRVFR KQKVDATIDE 900 AVSRVLSMVE SPGARQQYRR ILEKYRQAKA ELDGAEREIS STSYDVSSMG NDDIYQFV

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence

MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNE PPQKPGSGSL FLFNKRVLRF  60
FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI  120
VLVHYRDISE ARNNAGTISQ FSPISSSTFS QSPISGNTQQ LGSSPLLGES YEQIHNLSSP  180
GSVEFSSSVV IKSNGMNYSQ DIERTEEVTS SSSHDISQAL RRLEEQLSLN DDRLEEIGNC  240
YTQNENSHDS EKSTQGQTPS VPGQGYEIEH QQQSLGHEDW TEMLDGCNSS EHVLAQVRHV  300
DRNGVLLDEW TKELVAEQDG YTWLDYGGTN AQDVSLPVAK EVQNLAYPAY SAAVKTYMTN  360
PDNYTTLFDH NQIGISLEED LGLTIAQKQK FTIQEISPEW VYASETTKVF IIGSFLCDPL  420
DAAWTCMFGD IEVPVQIIQE GVICCHAPPH SPGKVTICVT SGNRESCSEV REFEYRVKPT  480
VCSHCSQPQR EASRSPEEML LLVRFVQLLL SNPSMQKGDT SESGVDLLGK SRADEDSWGQ  540
VIEALLAGTS TLSITTDWLL EELVKDKLQN WLSSKSQDDN MPCCSLSKKE QGVIHIISGL  600
GFEWALHPIL KSGVNVNFRD INGWTALHWA ARFGREKMVA ALIAAGASAG AVTDPNSKDP  660
TGKTAASVAA TWGHKGLAGY LSEVALTSHL FSLTLEESEL SKGSADVEAE RTLINIPKTS  720
PTTNEDQLSL KDSLAAARNA AQAAARIQSA FRAHSFRRRE QKEFAISAAS STSRDEYGIL  780
LSDIPELSAA SKFAFRNSRD YNSAALSIQK KYRGWKGRKD FLAFRQKVVK IQAHVRGYQV  840
RKNYKVCWAV GILEKVVLRW RRRGVGLRGF RLETDAIDES EDEDILRVFR KQKVDATIDE  900
AVSRVLSMVE SPGARQQYRR ILEKYRQAKA ELDGAEREIS STSYDVSSMG NDDIYQFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein