PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027099557.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 960aa MW: 107390 Da PI: 5.963

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027099557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	172.1	7.9e-54	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwlk+ e++ iL+n+e+ +t+e++++p sgsl+L+n++++r+frkDG+sw++k+dg+tv E+he+LKvg+ve+l+cyYah+e+np+fq XP_027099557.1 12 VREaQSRWLKPAEVLFILQNHENQMITNEPPQKPGSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPNFQ 106 45669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhyle 116 rr+yw+L+ ++e+ivlvhy++ XP_027099557.1 107 RRSYWMLNPAYEHIVLVHYRD 127 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence
MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNE PPQKPGSGSL FLFNKRVLRF 60 FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI 120 VLVHYRDISE LQARNNAGTI SQFSPISSST FSQSPISGNT QQLGSSPLLG ESYEQIHNLS 180 SPGSVEFSSS VVIKSNGMNY SQDIERTEEV TSSSSHDISQ ALRRLEEQLS LNDDRLEEIG 240 NCYTQNENSH DSEKSTQGQT PSVPGQGYEI EHQQQSLGHE DWTEMLDGCN SSEHVLAQVR 300 HVDRNGVLLD EWTKELVAEQ DGYTWLDYGG TNAQDVSLPV AKEVQNLAYP AYSAAVKTYM 360 TNPDNYTTLF DHNQIGISLE EDLGLTIAQK QKFTIQEISP EWVYASETTK VFIIGSFLCD 420 PLDAAWTCMF GDIEVPVQII QEGVICCHAP PHSPGKVTIC VTSGNRESCS EVREFEYRVK 480 PTVCSHCSQP QREASRSPEE MLLLVRFVQL LLSNPSMQKG DTSESGVDLL GKSRADEDSW 540 GQVIEALLAG TSTLSITTDW LLEELVKDKL QNWLSSKSQD DNMPCCSLSK KEQGVIHIIS 600 GLGFEWALHP ILKSGVNVNF RDINGWTALH WAARFGREKM VAALIAAGAS AGAVTDPNSK 660 DPTGKTAASV AATWGHKGLA GYLSEVALTS HLFSLTLEES ELSKGSADVE AERTLINIPK 720 TSPTTNEDQL SLKDSLAAAR NAAQAAARIQ SAFRAHSFRR REQKEFAISA ASSTSRDEYG 780 ILLSDIPELS AASKFAFRNS RDYNSAALSI QKKYRGWKGR KDFLAFRQKV VKIQAHVRGY 840 QVRKNYKVCW AVGILEKVVL RWRRRGVGLR GFRLETDAID ESEDEDILRV FRKQKVDATI 900 DEAVSRVLSM VESPGARQQY RRILEKYRQA KAELDGAERE ISSTSYDVSS MGNDDIYQFV

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence

MSQSGYNLND LVREAQSRWL KPAEVLFILQ NHENQMITNE PPQKPGSGSL FLFNKRVLRF  60
FRKDGHSWRR KRDGRTVGEA HERLKVGNVE ALNCYYAHGE QNPNFQRRSY WMLNPAYEHI  120
VLVHYRDISE LQARNNAGTI SQFSPISSST FSQSPISGNT QQLGSSPLLG ESYEQIHNLS  180
SPGSVEFSSS VVIKSNGMNY SQDIERTEEV TSSSSHDISQ ALRRLEEQLS LNDDRLEEIG  240
NCYTQNENSH DSEKSTQGQT PSVPGQGYEI EHQQQSLGHE DWTEMLDGCN SSEHVLAQVR  300
HVDRNGVLLD EWTKELVAEQ DGYTWLDYGG TNAQDVSLPV AKEVQNLAYP AYSAAVKTYM  360
TNPDNYTTLF DHNQIGISLE EDLGLTIAQK QKFTIQEISP EWVYASETTK VFIIGSFLCD  420
PLDAAWTCMF GDIEVPVQII QEGVICCHAP PHSPGKVTIC VTSGNRESCS EVREFEYRVK  480
PTVCSHCSQP QREASRSPEE MLLLVRFVQL LLSNPSMQKG DTSESGVDLL GKSRADEDSW  540
GQVIEALLAG TSTLSITTDW LLEELVKDKL QNWLSSKSQD DNMPCCSLSK KEQGVIHIIS  600
GLGFEWALHP ILKSGVNVNF RDINGWTALH WAARFGREKM VAALIAAGAS AGAVTDPNSK  660
DPTGKTAASV AATWGHKGLA GYLSEVALTS HLFSLTLEES ELSKGSADVE AERTLINIPK  720
TSPTTNEDQL SLKDSLAAAR NAAQAAARIQ SAFRAHSFRR REQKEFAISA ASSTSRDEYG  780
ILLSDIPELS AASKFAFRNS RDYNSAALSI QKKYRGWKGR KDFLAFRQKV VKIQAHVRGY  840
QVRKNYKVCW AVGILEKVVL RWRRRGVGLR GFRLETDAID ESEDEDILRV FRKQKVDATI  900
DEAVSRVLSM VESPGARQQY RRILEKYRQA KAELDGAERE ISSTSYDVSS MGNDDIYQFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein