PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027099537.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 343aa    MW: 37938.6 Da    PI: 8.1537
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027099537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.56.1e-15259284126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG C+yGd C+FaHg
  XP_027099537.1 259 FKTELCNKWQETGACPYGDHCQFAHG 284
                     79***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MEKESSKTSV HGGTSNIRRN LSYNDISRSP SPSPSFLNYE SDGGEFTTYE KEIMMASRLH  60
QSDLLTDLHH HQDLVDRQNT VLSYMKEAAK QAQALRQENI NLKMVNAELT NRLGLLIKAT  120
SEYAASFGFS GVDPGLNVDS LLNGLSRMSL ADGAGVNEGN VWSGPAADGD SPSPTSVMES  180
GGVEGSGEGT PGRILLPKSI SIRSTGYLKP VQPGGNGGGK VNKVQNRSKI WDDTHKVFVR  240
GGKKEEQPLE LEVYNQGMFK TELCNKWQET GACPYGDHCQ FAHGIQELRP VIRHPRYKTE  300
VCRMVLNGDH CPYGHRCHFR HTLTDQEKVI RSINIRSLKV LNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.17e-61C3H family protein