PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027099355.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 349aa MW: 39739.8 Da PI: 8.2162

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027099355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.2	5.6e-20	144	193	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+ ae+Aa a+++a+++++g XP_027099355.1 144 HYRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFDMAEDAALAYDEAALRFKG 193 7******.******94....45*********************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MAGKGREEED GKRKEIEEKE RRRKREEEEG GGRREKHEER EGGEQRGRGK EKKIKRRVLD 60 RRHGKRPLSS EAWKKEEKNK GQDHHHGSLD GGVDLEFENE TITRVASSEY SPDSTHPLLE 120 SAVSPATAAA VTSFRQEAQA GRRHYRGVRR RPWGKWAAEI RDPKKAARVW LGTFDMAEDA 180 ALAYDEAALR FKGTKAKLNF PERVVQGGKY SQSQLRYPTA VSSSSLSRQQ YNPNPQEATE 240 TMINPSNTNV PPDTMTMTNY PHLLQYAQLL SSTDAELPYY ASALYDQQQL LQPNPQITSP 300 SAHVVTPDLH RQPQEDFSSF SSEQCDYQSF CSSDFLKYGK DFDPKSPDH

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MAGKGREEED GKRKEIEEKE RRRKREEEEG GGRREKHEER EGGEQRGRGK EKKIKRRVLD  60
RRHGKRPLSS EAWKKEEKNK GQDHHHGSLD GGVDLEFENE TITRVASSEY SPDSTHPLLE  120
SAVSPATAAA VTSFRQEAQA GRRHYRGVRR RPWGKWAAEI RDPKKAARVW LGTFDMAEDA  180
ALAYDEAALR FKGTKAKLNF PERVVQGGKY SQSQLRYPTA VSSSSLSRQQ YNPNPQEATE  240
TMINPSNTNV PPDTMTMTNY PHLLQYAQLL SSTDAELPYY ASALYDQQQL LQPNPQITSP  300
SAHVVTPDLH RQPQEDFSSF SSEQCDYQSF CSSDFLKYGK DFDPKSPDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	55	RRRKREEEEGGGRREKHEEREGGEQRGRGKEKKIK
2	22	52	RRKREEEEGGGRREKHEEREGGEQRGRGKEK
3	22	56	RRRKREEEEGGGRREKHEEREGGEQRGRGKEKKIK
4	55	66	KRRVLDRRHGKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13330.1	7e-24	ERF family protein