PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027099056.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 489aa MW: 54801.2 Da PI: 6.9017

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027099056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.6e-16	136	182	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l+++vk +G + W+ Ia++m gR +kqc++rw+++l XP_027099056.1 136 KGQWTEEEDNTLKRLVKHFGVKKWAQIAEKMV-GRAGKQCRERWHNHL 182 799***************************.***********97 PP
2	Myb_DNA-binding	58	2.2e-18	188	230	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eE+ llv+a+ q G++ W+ Ia++++ gRt++++k++w+ XP_027099056.1 188 KDTWSPEEERLLVEAHMQVGNR-WAEIAKRIP-GRTENSIKNHWN 230 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MEEVSFLKPK PTLTAIDKFL LGQSHFCQPE ILANFKNKGN LVPVNFDFVS SSTSGGAIHS 60 HAREGEGLFP RPTILPPPHD TSSFVNGVFF NEESTPNLSQ EMNLTSGFGE EEDLEPRVCR 120 RVGRRGKSGP SVALIKGQWT EEEDNTLKRL VKHFGVKKWA QIAEKMVGRA GKQCRERWHN 180 HLRPDIKKDT WSPEEERLLV EAHMQVGNRW AEIAKRIPGR TENSIKNHWN ATKRRQNSKR 240 RVKKPEGAQN GRNQSTILQE YIKSTCSNNN FLTTISADLR STTVTPANSA TSHPTPPNSV 300 VSEDPISPDF NLPYPEVCQS TCDDSSFYMT QQSYDDEMKF MQNLFGSNNL NASSFGENDN 360 RKAPLDTGID RKNKCYISFN PFGYNSSSGD NQSFGGNWDY GIFPSYAEPN MPTKPYLGDQ 420 ENNQSASMYL DLYLPRILEG SNAITAPPDP SKMSMETLIM DQASPSVGKE VDLIEMVSNS 480 QFAHKNAAK

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MEEVSFLKPK PTLTAIDKFL LGQSHFCQPE ILANFKNKGN LVPVNFDFVS SSTSGGAIHS  60
HAREGEGLFP RPTILPPPHD TSSFVNGVFF NEESTPNLSQ EMNLTSGFGE EEDLEPRVCR  120
RVGRRGKSGP SVALIKGQWT EEEDNTLKRL VKHFGVKKWA QIAEKMVGRA GKQCRERWHN  180
HLRPDIKKDT WSPEEERLLV EAHMQVGNRW AEIAKRIPGR TENSIKNHWN ATKRRQNSKR  240
RVKKPEGAQN GRNQSTILQE YIKSTCSNNN FLTTISADLR STTVTPANSA TSHPTPPNSV  300
VSEDPISPDF NLPYPEVCQS TCDDSSFYMT QQSYDDEMKF MQNLFGSNNL NASSFGENDN  360
RKAPLDTGID RKNKCYISFN PFGYNSSSGD NQSFGGNWDY GIFPSYAEPN MPTKPYLGDQ  420
ENNQSASMYL DLYLPRILEG SNAITAPPDP SKMSMETLIM DQASPSVGKE VDLIEMVSNS  480
QFAHKNAAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	4e-64	MYB family protein