PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027099037.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 756aa MW: 87691.9 Da PI: 8.2356

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027099037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.8	4.3e-19	86	175	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn YAk GF +rks+ k+ + r++vC +eg+r+e+ + ++ +r+ +a trtgC a+++vk + + k++vt++ eHnH+l XP_027099037.1 86 EFYNLYAKLSGFGIRKSNAKRD-ADSISRFRKWVCCCEGYRNEKWFNyEDWKREAKAITRTGCGACFRVKYDIeSVKYVVTRFIIEHNHPL 175 6**************99888.666688999******9988857789999************98899***********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence
MGQDGVLKTH DMVQETENGK MGMDGCGKLM SFDLNQEPEC DRDTCSEESG GSIGGHEDEE 60 ADELVGAIGV DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKRDADS ISRFRKWVCC 120 CEGYRNEKWF NYEDWKREAK AITRTGCGAC FRVKYDIESV KYVVTRFIIE HNHPLPSEAS 180 VQHIRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER 240 RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGILTR LFWADSKSRV DFSVFGDVLV 300 FDTTYKTNKY RKPLVVLAGV NNHLNSTVFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA 360 VMTDGDSAMR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRLYDLM ARKFSTLEFE 420 DRWARLVNEC GVVENEWVKK LYRRRRLWAE AYLRGHFFTG MRSTQRCEKM NAFLNEYLNE 480 KMRLYEFVRS FDLAIAWLRH TESKAVHTSE NTKPVLTTIL PELEGCAAEV FTRNVFFMVR 540 KHLNRQGFLI SEGWSEDGGS RTYYYSKYGG HEISWRVDYD RSMEKLICSC MKFESKGIPC 600 AHMFRVMVVE GMNRIPEACI SKRWTKGVYS TNNGMKAFVA DEQLTQMARY DTLKSSCNTM 660 CYYASYMDDV FNDLQQMFDK HSVDLKEKWI ERGYGGDGFA MDSRVMNDRS RRTFGLLDPR 720 MSRSKCDHKH AEVKKKRKCG HCRYNRKCIR SYTVVN

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence

MGQDGVLKTH DMVQETENGK MGMDGCGKLM SFDLNQEPEC DRDTCSEESG GSIGGHEDEE  60
ADELVGAIGV DDVMKLTFDT EEEAGEFYNL YAKLSGFGIR KSNAKRDADS ISRFRKWVCC  120
CEGYRNEKWF NYEDWKREAK AITRTGCGAC FRVKYDIESV KYVVTRFIIE HNHPLPSEAS  180
VQHIRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER  240
RKDIFNGDAE GALGFLAAKK DADDMFFYKY HVDNEGILTR LFWADSKSRV DFSVFGDVLV  300
FDTTYKTNKY RKPLVVLAGV NNHLNSTVFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA  360
VMTDGDSAMR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRLYDLM ARKFSTLEFE  420
DRWARLVNEC GVVENEWVKK LYRRRRLWAE AYLRGHFFTG MRSTQRCEKM NAFLNEYLNE  480
KMRLYEFVRS FDLAIAWLRH TESKAVHTSE NTKPVLTTIL PELEGCAAEV FTRNVFFMVR  540
KHLNRQGFLI SEGWSEDGGS RTYYYSKYGG HEISWRVDYD RSMEKLICSC MKFESKGIPC  600
AHMFRVMVVE GMNRIPEACI SKRWTKGVYS TNNGMKAFVA DEQLTQMARY DTLKSSCNTM  660
CYYASYMDDV FNDLQQMFDK HSVDLKEKWI ERGYGGDGFA MDSRVMNDRS RRTFGLLDPR  720
MSRSKCDHKH AEVKKKRKCG HCRYNRKCIR SYTVVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	442	447	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-95	FAR1 family protein