PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098938.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 462aa MW: 53922.8 Da PI: 8.3659

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.2	3.1e-14	2	79	11	89
FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Fsvrk++ ++ ++g +t+r++ C keg +++ + + + +rtr+ t+tg ak+++ + + + k++v++l+leHnHel XP_027098938.1 2 SFSVRKDYLNND-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRVPTKTGYGAKMVIVLLRgTMKYRVHDLVLEHNHEL 79 69**998887.8999************9999.999************999998**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MSFSVRKDYL NNDKDGVTTS RRYSCCKEGV KRKYEGDVMP KRTRVPTKTG YGAKMVIVLL 60 RGTMKYRVHD LVLEHNHELH IAQCAHMIPS QRKVSVAQGF QAEISEDAGI SLKQSHELMG 120 KEAGGMSNVG YTRDNLKRYL RTRWERSLKY GEADSMLNYF QEQTLENPSF FHAVQLDCEE 180 QITNIFWADA GMLINYNFFG DVVTFDTTYK TNKEYRPLGV FVGFNQHRQI VIFGAALMYD 240 ETIDSFKWVF GTFLEAMCRK RPSTILTDQD HAMAAAFSLV MPQTFHGLCT FHIRRNFMKH 300 LGNHYKESSD LPYMFGACMY EIEEVEQFNR VWEAMVKKHN LENNEWLSGL YRIRDKWARC 360 MMKERWTAGI QSIQLSESLN AAIKNYLKLD HDLVQFFRHF NRVVDDKRHN ELIVEYEMRQ 420 KLPMVGLRQT PMLVHAADTY SPTVFVAFQN EYGESTAMVI LK

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MSFSVRKDYL NNDKDGVTTS RRYSCCKEGV KRKYEGDVMP KRTRVPTKTG YGAKMVIVLL  60
RGTMKYRVHD LVLEHNHELH IAQCAHMIPS QRKVSVAQGF QAEISEDAGI SLKQSHELMG  120
KEAGGMSNVG YTRDNLKRYL RTRWERSLKY GEADSMLNYF QEQTLENPSF FHAVQLDCEE  180
QITNIFWADA GMLINYNFFG DVVTFDTTYK TNKEYRPLGV FVGFNQHRQI VIFGAALMYD  240
ETIDSFKWVF GTFLEAMCRK RPSTILTDQD HAMAAAFSLV MPQTFHGLCT FHIRRNFMKH  300
LGNHYKESSD LPYMFGACMY EIEEVEQFNR VWEAMVKKHN LENNEWLSGL YRIRDKWARC  360
MMKERWTAGI QSIQLSESLN AAIKNYLKLD HDLVQFFRHF NRVVDDKRHN ELIVEYEMRQ  420
KLPMVGLRQT PMLVHAADTY SPTVFVAFQN EYGESTAMVI LK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-77	FAR1 family protein