PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098867.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 395aa MW: 46035.2 Da PI: 6.8216

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098867.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.3	9.4e-27	63	148	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA++ GFsvr+++ +ks+ +++i+ ++fvCskeg+r+++++k + +r +tr gCka + v+++++gkw +++l+leHnH+l XP_027098867.1 63 CYSNYAHNKGFSVRRNRITKSRSDKSIIGQEFVCSKEGFRSKKDSK---ADMPRDKTRQGCKALVYVSQKEEGKWIIARLVLEHNHQLK 148 7**************************************99877...999*********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MGTECRMERE LGIECPMEQD QFDHDAAHGS MPEDSTNEQI EPRKEVNLYV GMEFESLDDA 60 FKCYSNYAHN KGFSVRRNRI TKSRSDKSII GQEFVCSKEG FRSKKDSKAD MPRDKTRQGC 120 KALVYVSQKE EGKWIIARLV LEHNHQLKLG GIGNLNVTDH DVCNYLSTKR HKELEKGDAQ 180 LMLQYFQKRQ SENPGFFYAI QVDIEGRLAN CFWADAKSRS LYKHFGDVVT FDPTYLTNKY 240 KMPFVPLTGV NQHYQSILFG GALLWDETEE SFVWLLQTWL EAMLGCPPKT VITDQDTAIT 300 NAVARVLPQS THHFCMWHIE KKFPETLSHI YHQNNDFKYH FSKCIHDTIT PEEFEMAWTE 360 LIEKYKLQNN TWIQKVYSIR ERWVPAFVRA SFCAG

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MGTECRMERE LGIECPMEQD QFDHDAAHGS MPEDSTNEQI EPRKEVNLYV GMEFESLDDA  60
FKCYSNYAHN KGFSVRRNRI TKSRSDKSII GQEFVCSKEG FRSKKDSKAD MPRDKTRQGC  120
KALVYVSQKE EGKWIIARLV LEHNHQLKLG GIGNLNVTDH DVCNYLSTKR HKELEKGDAQ  180
LMLQYFQKRQ SENPGFFYAI QVDIEGRLAN CFWADAKSRS LYKHFGDVVT FDPTYLTNKY  240
KMPFVPLTGV NQHYQSILFG GALLWDETEE SFVWLLQTWL EAMLGCPPKT VITDQDTAIT  300
NAVARVLPQS THHFCMWHIE KKFPETLSHI YHQNNDFKYH FSKCIHDTIT PEEFEMAWTE  360
LIEKYKLQNN TWIQKVYSIR ERWVPAFVRA SFCAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-97	FAR1 family protein