PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027098578.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 446aa MW: 49478.2 Da PI: 5.1445

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027098578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30.8	6e-10	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC++C + H+ H++v XP_027098578.1 16 ARACDNCIKKRARWYCAADDAFLCQNCDASVHSAnplarrHERV 59 578*****************************657888888876 PP
2	CCT	67.7	3.1e-23	389	432	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_027098578.1 389 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 432 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MVSDRKLANA MGGKTARACD NCIKKRARWY CAADDAFLCQ NCDASVHSAN PLARRHERVR 60 LKTSSLKPSK ELSLEISVPS WHHGFTKKAR TPRSGKHAKS KSDQEPARNP LHLVPEICSD 120 EIETSHEENE EQLLYRVPIF DPFVAELRTS ENSNEAATNM GNDGEAADAV GVDESKGTVY 180 DCGNDINQFH GPLPSEMELA EFAADVESLL GKGLDDESFA IEGLGLSDCK EADLVDNSSL 240 GSGRVKVEDE GEAEVAMGNN QIDGEIDMSR GDHEPFELSF DYDSPMTCEE EDNKAGVERA 300 IALKDHLKSE DCKVEDAGIN TNKKILLSLD YEGVISAWAD QRSPWTTGER PELDSNDCWP 360 DCLGTCGTIH NLYGEVGMFG HPAMMDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK 420 RPRMKGRFVK RATFSAAAAA FPLHTK

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MVSDRKLANA MGGKTARACD NCIKKRARWY CAADDAFLCQ NCDASVHSAN PLARRHERVR  60
LKTSSLKPSK ELSLEISVPS WHHGFTKKAR TPRSGKHAKS KSDQEPARNP LHLVPEICSD  120
EIETSHEENE EQLLYRVPIF DPFVAELRTS ENSNEAATNM GNDGEAADAV GVDESKGTVY  180
DCGNDINQFH GPLPSEMELA EFAADVESLL GKGLDDESFA IEGLGLSDCK EADLVDNSSL  240
GSGRVKVEDE GEAEVAMGNN QIDGEIDMSR GDHEPFELSF DYDSPMTCEE EDNKAGVERA  300
IALKDHLKSE DCKVEDAGIN TNKKILLSLD YEGVISAWAD QRSPWTTGER PELDSNDCWP  360
DCLGTCGTIH NLYGEVGMFG HPAMMDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK  420
RPRMKGRFVK RATFSAAAAA FPLHTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	400	416	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-102	CO-like family protein