PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027098305.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 241aa    MW: 27242.7 Da    PI: 9.3401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027098305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08156203455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L++l+P +     k +  a +L   ++Y++sLq
  XP_027098305.1 156 SHSLAERMRREKINQKLRCLQDLVPGC----YKSMGMAVMLDVIINYVRSLQ 203
                     8*************************8....355888889999999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MMNSNMDVVN SLTEIDSFNP NVQELLSLTT HVGFSDHNRQ QSQIPFSFSN DTSHNPNASH  60
HHHLQVPLDF ESAAQFFPQG GVPISHGCND SNSLSEPDYL ANSSSRGSAS AGIPVNKPKG  120
TYNYGEKKRK RSNGKETEKP KEVVHVRAKR GQATDSHSLA ERMRREKINQ KLRCLQDLVP  180
GCYKSMGMAV MLDVIINYVR SLQNQIDQVY FMTSTRWTWM PYLQPKHVLI SQDLLGVKRK  240
D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132KKRKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.15e-44bHLH family protein